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    si:dkey-194g4.1 si:dkey-194g4.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100148296, updated on 4-Jan-2025

    Summary

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    Official Symbol
    si:dkey-194g4.1provided by ZNC
    Official Full Name
    si:dkey-194g4.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141215-40
    See related
    Ensembl:ENSDARG00000109597 AllianceGenome:ZFIN:ZDB-GENE-141215-40
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human PGBD4 (piggyBac transposable element derived 4). [provided by Alliance of Genome Resources, Jan 2025]
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    Genomic context

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    See si:dkey-194g4.1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (14499677..14507409, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (13813177..13820935, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene tromal interaction molecule 2a Neighboring gene uncharacterized LOC101882365 Neighboring gene serine/threonine-protein kinase pim-3-like Neighboring gene uncharacterized LOC137495467

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    piggyBac transposable element-derived protein 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      14499677..14507409 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476058.2 → XP_021331733.1  piggyBac transposable element-derived protein 4-like isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z0F1, A0A8M9PX96
      Conserved Domains (2) summary
      pfam05485
      Location:5 → 78
      THAP; THAP domain
      pfam13843
      Location:314 → 684
      DDE_Tnp_1_7; Transposase IS4

    2. XM_068221022.1 → XP_068077123.1  piggyBac transposable element-derived protein 4-like isoform X2

      UniProtKB/TrEMBL
      A0A8M6Z0F1
      Related
      ENSDARP00000057043.7, ENSDART00000057044.8

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394466.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      24730..32018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159852.5 → XP_005159909.3  piggyBac transposable element-derived protein 4-like isoform X1

      UniProtKB/TrEMBL
      A0A8M2B6R3, A0A8M6Z0F1
      Conserved Domains (2) summary
      pfam05485
      Location:5 → 78
      THAP; THAP domain
      pfam13843
      Location:320 → 690
      DDE_Tnp_1_7; Transposase IS4
    Nucleotide Protein Strain
    Heading Accession and Version

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