si:ch211-157c3.4 si:ch211-157c3.4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-157c3.4provided by ZNC
Official Full Name: si:ch211-157c3.4provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-8454
See related: Ensembl:ENSDARG00000087093 AllianceGenome:ZFIN:ZDB-GENE-030131-8454
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb12c06; fb52f02; wu:fb12c06; wu:fb52f02
Summary: Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be active in cytoplasmic side of late endosome membrane; cytoplasmic side of lysosomal membrane; and nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

See si:ch211-157c3.4 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (27642381..27647845, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (27511539..27517064, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fk95b04.x1 (e-PCR)
- UniSTS:201775

fb12c06.x1 (e-PCR)
- UniSTS:202863

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasmic side of late endosome membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasmic side of lysosomal membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: lITAF domain-containing protein

Names: lipopolysaccharide-induced tumor necrosis factor-alpha factor-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.