U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    agpat3 1-acylglycerol-3-phosphate O-acyltransferase 3 [ Danio rerio (zebrafish) ]

    Gene ID: 406734, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    agpat3provided by ZNC
    Official Full Name
    1-acylglycerol-3-phosphate O-acyltransferase 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2765
    See related
    Ensembl:ENSDARG00000036549 AllianceGenome:ZFIN:ZDB-GENE-040426-2765
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd13g09; fj78c06; zgc:56524; wu:fa16h03; wu:fd13g09; wu:fj78c06; wu:fq33b10
    Summary
    Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Is expressed in central nervous system; digestive system; optic vesicle; pronephric duct; and visual system. Orthologous to human AGPAT3 (1-acylglycerol-3-phosphate O-acyltransferase 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See agpat3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (46834730..46875468, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (46146001..46184268, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137495289 Neighboring gene uncharacterized LOC101884727 Neighboring gene deleted in lymphocytic leukemia 7 Neighboring gene pyridoxal (pyridoxine, vitamin B6) kinase b Neighboring gene transmembrane serine protease 3b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Initiation of zebrafish haematopoiesis by the TATA-box-binding protein-related factor Trf3. Hart DO, et al. Nature, 2007 Dec 13. PMID 18046332, Free PMC Article
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables 1-acylglycerol-3-phosphate O-acyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables 1-acylglycerol-3-phosphate O-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endomembrane system IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
    NP_998590.1
    XP_005171033.1
    XP_005171034.1
    XP_005171035.1
    XP_009292100.1
    XP_009292101.1
    XP_009292112.1
    XP_009292116.1
    XP_021325986.1
    XP_021326051.1
    XP_021326068.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213425.1 → NP_998590.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma

      See identical proteins and their annotated locations for NP_998590.1

      Status: PROVISIONAL

      Source sequence(s)
      BC049474
      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Related
      ENSDARP00000100307.2, ENSDART00000115081.4
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      46834730..46875468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009293837.4 → XP_009292112.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      See identical proteins and their annotated locations for XP_009292112.1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    2. XM_009293825.4 → XP_009292100.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      See identical proteins and their annotated locations for XP_009292100.1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    3. XM_009293826.4 → XP_009292101.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      See identical proteins and their annotated locations for XP_009292101.1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    4. XM_005170977.5 → XP_005171034.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      See identical proteins and their annotated locations for XP_005171034.1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    5. XM_009293841.4 → XP_009292116.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      See identical proteins and their annotated locations for XP_009292116.1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    6. XM_005170976.5 → XP_005171033.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      See identical proteins and their annotated locations for XP_005171033.1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    7. XM_021470311.2 → XP_021325986.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    8. XM_021470393.2 → XP_021326068.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    9. XM_021470376.2 → XP_021326051.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase

    10. XM_005170978.5 → XP_005171035.1  1-acyl-sn-glycerol-3-phosphate acyltransferase gamma isoform X1

      See identical proteins and their annotated locations for XP_005171035.1

      UniProtKB/TrEMBL
      B8A4Q3, F6P476, Q7ZWC9
      Conserved Domains (1) summary
      PLN02380
      Location:12 → 377
      PLN02380; 1-acyl-sn-glycerol-3-phosphate acyltransferase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.