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    slc16a9b solute carrier family 16 member 9b [ Danio rerio (zebrafish) ]

    Gene ID: 445158, updated on 9-Dec-2024

    Summary

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    Official Symbol
    slc16a9bprovided by ZNC
    Official Full Name
    solute carrier family 16 member 9bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-69
    See related
    Ensembl:ENSDARG00000104687 AllianceGenome:ZFIN:ZDB-GENE-040801-69
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    slc16a9; wu:fk66d11; zgc:101135
    Summary
    Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in carboxylic acid transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC16A9 (solute carrier family 16 member 9). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See slc16a9b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (7589190..7607112, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (7555068..7572990, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137496790 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein-like b Neighboring gene si:ch73-51i5.2 Neighboring gene coiled-coil domain containing 6b Neighboring gene ankyrin 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. MicroRNAs control neurobehavioral development and function in zebrafish. Tal TL, et al. FASEB J, 2012 Apr. PMID 22253472, Free PMC Article
    2. Clozapine-induced transcriptional changes in the zebrafish brain. Viana J, et al. NPJ Schizophr, 2020 Feb 3. PMID 32015324, Free PMC Article
    3. Structurally distinct polycyclic aromatic hydrocarbons induce differential transcriptional responses in developing zebrafish. Goodale BC, et al. Toxicol Appl Pharmacol, 2013 Nov 1. PMID 23656968, Free PMC Article
    4. The insecticide permethrin induces transgenerational behavioral changes linked to transcriptomic and epigenetic alterations in zebrafish (Danio rerio). Blanc M, et al. Sci Total Environ, 2021 Jul 20. PMID 33752003
    5. Transcriptional profiling reveals barcode-like toxicogenomic responses in the zebrafish embryo. Yang L, et al. Genome Biol, 2007. PMID 17961207, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables monocarboxylic acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carboxylic acid transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    monocarboxylate transporter 9b
    Names
    solute carrier family 16 (monocarboxylic acid transporters), member 9b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003552.1 → NP_001003552.1  monocarboxylate transporter 9b

      See identical proteins and their annotated locations for NP_001003552.1

      Status: PROVISIONAL

      Source sequence(s)
      BC078337
      UniProtKB/TrEMBL
      Q6DBW3
      Related
      ENSDARP00000134789.1, ENSDART00000158095.2
      Conserved Domains (2) summary
      cd06174
      Location:19 → 455
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      TIGR00892
      Location:8 → 474
      2A0113; monocarboxylate transporter 1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      7589190..7607112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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