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    LOC563780 uncharacterized LOC563780 [ Danio rerio (zebrafish) ]

    Gene ID: 563780, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC563780
    Gene description
    uncharacterized LOC563780
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC563780 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (18255857..18271019)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (18002475..18027295, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domain family 1b Neighboring gene musculoskeletal, embryonic nuclear protein 1b Neighboring gene STIM activating enhance Neighboring gene Scm like with four mbt domains 1 Neighboring gene protein kinase C, delta b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC563780

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      18255857..18271019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479786.2 → XP_021335461.1  uncharacterized protein LOC563780

      UniProtKB/TrEMBL
      A0A8M9QI12
      Conserved Domains (1) summary
      pfam13837
      Location:4 → 89
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394814.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      179205..194367
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472469.2 → XP_021328144.1  uncharacterized protein LOC563780

      UniProtKB/TrEMBL
      A0A8M9QI12
      Conserved Domains (1) summary
      pfam13837
      Location:4 → 89
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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