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    zgc:153631 zgc:153631 [ Danio rerio (zebrafish) ]

    Gene ID: 751714, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:153631provided by ZNC
    Official Full Name
    zgc:153631provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060825-208
    See related
    Ensembl:ENSDARG00000068993 AllianceGenome:ZFIN:ZDB-GENE-060825-208
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc41c11; wu:fc41c11
    Summary
    Predicted to be involved in several processes, including defense response to bacterium; negative regulation of alpha-beta T cell proliferation; and positive regulation of T cell migration. Predicted to be located in membrane. Predicted to be active in external side of plasma membrane. Orthologous to human TNFRSF14 (TNF receptor superfamily member 14). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:153631 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (22355906..22369783)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (22336769..22348544)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 1 Neighboring gene mitotic arrest deficient 2 like 2 Neighboring gene uncharacterized LOC137496340 Neighboring gene si:dkey-23c22.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC153631

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in defense response to Gram-negative bacterium IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in defense response to Gram-positive bacterium IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in negative regulation of alpha-beta T cell proliferation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of T cell migration IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of cytokine production involved in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC751714

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045424.2 → NP_001038889.2  uncharacterized protein LOC751714 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CT737125
      UniProtKB/TrEMBL
      Q0P402
      Related
      ENSDARP00000090786.2, ENSDART00000100014.4

    2. NM_001430990.1 → NP_001417919.1  uncharacterized protein LOC751714 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CT737125

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      22355906..22369783
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223027.1 → XP_068079128.1  uncharacterized protein LOC751714 isoform X1

      UniProtKB/TrEMBL
      Q0P402
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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