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    svopl SVOP-like [ Danio rerio (zebrafish) ]

    Gene ID: 492766, updated on 9-Dec-2024

    Summary

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    Official Symbol
    svoplprovided by ZNC
    Official Full Name
    SVOP-likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041114-109
    See related
    Ensembl:ENSDARG00000057983 AllianceGenome:ZFIN:ZDB-GENE-041114-109
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:101741
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Is expressed in hatching gland; myotome; pectoral fin musculature; polster; and somite. Orthologous to human SVOPL (SVOP like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See svopl in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (9769046..9781132, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (9768130..9780216, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 3b Neighboring gene uncharacterized LOC103910414 Neighboring gene si:dkeyp-27e10.3 Neighboring gene poly (ADP-ribose) polymerase family, member 12b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characteristics of 29 novel atypical solute carriers of major facilitator superfamily type: evolutionary conservation, predicted structure and neuronal co-expression. Perland E, et al. Open Biol, 2017 Sep. PMID 28878041, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transporter SVOPL
    Names
    SVOP-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007407.2 → NP_001007408.2  putative transporter SVOPL

      See identical proteins and their annotated locations for NP_001007408.2

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      BX649444
      UniProtKB/Swiss-Prot
      Q1LVS8, Q5U3R1
      UniProtKB/TrEMBL
      A0A8M9QB66
      Related
      ENSDARP00000125241.1, ENSDART00000150664.3
      Conserved Domains (1) summary
      cl26863
      Location:49 → 504
      Sugar_tr; Sugar (and other) transporter

    2. NM_001045229.1 → NP_001038694.1  putative transporter SVOPL

      See identical proteins and their annotated locations for NP_001038694.1

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      BX649444
      UniProtKB/Swiss-Prot
      Q1LVS8, Q5U3R1
      UniProtKB/TrEMBL
      A0A8M9QB66
      Related
      ENSDARP00000075190.6, ENSDART00000080744.8
      Conserved Domains (1) summary
      cl26863
      Location:49 → 504
      Sugar_tr; Sugar (and other) transporter

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      9769046..9781132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219611.1 → XP_068075712.1  putative transporter SVOPL isoform X2

    2. XM_068219609.1 → XP_068075710.1  putative transporter SVOPL isoform X1

      UniProtKB/Swiss-Prot
      Q1LVS8, Q5U3R1
      UniProtKB/TrEMBL
      A0A8M9QB66

    3. XM_021475010.2 → XP_021330685.1  putative transporter SVOPL isoform X1

      UniProtKB/Swiss-Prot
      Q1LVS8, Q5U3R1
      UniProtKB/TrEMBL
      A0A8M9QB66
      Conserved Domains (1) summary
      cl26863
      Location:49 → 504
      Sugar_tr; Sugar (and other) transporter

    4. XM_068219610.1 → XP_068075711.1  putative transporter SVOPL isoform X2

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395230.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      190725..202826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1LVS8.1 GenPept UniProtKB/Swiss-Prot:Q1LVS8

    Gene LinkOut

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