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    chtopa chromatin target of PRMT1a [ Danio rerio (zebrafish) ]

    Gene ID: 321491, updated on 9-Dec-2024

    Summary

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    Official Symbol
    chtopaprovided by ZNC
    Official Full Name
    chromatin target of PRMT1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-210
    See related
    Ensembl:ENSDARG00000057234 AllianceGenome:ZFIN:ZDB-GENE-030131-210
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb17a05; zgc:55292; wu:fb17a05; wu:fi05e09
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nuclear speck. Orthologous to human CHTOP (chromatin target of PRMT1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See chtopa in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (23897666..23918122, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (24313443..24333896, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 92 Neighboring gene microtubule associated tyrosine carboxypeptidase 2 Neighboring gene SNAP associated protein Neighboring gene SMAD family member 10a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    chromatin target of PRMT1a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199546.1 → NP_955840.1  chromatin target of PRMT1a

      See identical proteins and their annotated locations for NP_955840.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045295
      UniProtKB/TrEMBL
      A0A8M1PD08, Q7ZW44
      Related
      ENSDARP00000074293.3, ENSDART00000079842.5
      Conserved Domains (1) summary
      pfam13865
      Location:194 → 228
      FoP_duplication; C-terminal duplication domain of Friend of PRMT1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      23897666..23918122 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467993.2 → XP_021323668.1  chromatin target of PRMT1a isoform X1

      UniProtKB/TrEMBL
      A0A8M9PAT6
      Conserved Domains (1) summary
      pfam13865
      Location:273 → 305
      FoP_duplication; C-terminal duplication domain of Friend of PRMT1
    Nucleotide Protein Strain
    Heading Accession and Version

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