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    ttc13 tetratricopeptide repeat domain 13 [ Danio rerio (zebrafish) ]

    Gene ID: 100170789, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ttc13provided by ZNC
    Official Full Name
    tetratricopeptide repeat domain 13provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080722-25
    See related
    Ensembl:ENSDARG00000063242 AllianceGenome:ZFIN:ZDB-GENE-080722-25
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:194598
    Summary
    Orthologous to human TTC13 (tetratricopeptide repeat domain 13). [provided by Alliance of Genome Resources, Dec 2024]
    Annotation information
    Annotation category: suggests misassembly
    Orthologs
    human mouse all
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    Genomic context

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    See ttc13 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (3954579..3997531, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (4034078..4077319)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene C-type lectin domain containing 11A Neighboring gene selenoprotein L Neighboring gene ARV1 homolog, fatty acid homeostasis modulator Neighboring gene family with sequence similarity 89 member A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130627.1 → NP_001124099.1  tetratricopeptide repeat protein 13 precursor

      See identical proteins and their annotated locations for NP_001124099.1

      Status: PROVISIONAL

      Source sequence(s)
      BC163293
      UniProtKB/TrEMBL
      B3DIY5
      Related
      ENSDARP00000086649.5, ENSDART00000092217.6
      Conserved Domains (3) summary
      smart00028
      Location:283 → 316
      TPR; Tetratricopeptide repeats
      sd00006
      Location:215 → 243
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:248 → 313
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      3954579..3997531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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