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    clec3ba C-type lectin domain family 3, member Ba [ Danio rerio (zebrafish) ]

    Gene ID: 572488, updated on 27-Dec-2024

    Summary

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    Official Symbol
    clec3baprovided by ZNC
    Official Full Name
    C-type lectin domain family 3, member Baprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110411-71
    See related
    Ensembl:ENSDARG00000076541 AllianceGenome:ZFIN:ZDB-GENE-110411-71
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    clec3b; si:dkey-288i20.3
    Summary
    Human ortholog(s) of this gene implicated in osteoarthritis and retinal macular dystrophy 4. Orthologous to human CLEC3B (C-type lectin domain family 3 member B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See clec3ba in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (2833455..2844199)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (2595794..2606533)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene transforming growth factor, beta 2 Neighboring gene acyl-CoA thioesterase 22 Neighboring gene fasciculation and elongation protein zeta 2a Neighboring gene CUB domain containing protein 1a Neighboring gene transmembrane protein 158

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    tetranectin
    Names
    C-type lectin domain family 3, member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      2833455..2844199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466804.2 → XP_021322479.2  tetranectin

      UniProtKB/TrEMBL
      A0A8M9PDC0
      Related
      ENSDARP00000098343.2, ENSDART00000108735.3
    Nucleotide Protein Strain
    Heading Accession and Version

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