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    sft2d3 SFT2 domain containing 3 [ Danio rerio (zebrafish) ]

    Gene ID: 407688, updated on 9-Dec-2024

    Summary

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    Official Symbol
    sft2d3provided by ZNC
    Official Full Name
    SFT2 domain containing 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070907-1
    See related
    Ensembl:ENSDARG00000070284 AllianceGenome:ZFIN:ZDB-GENE-070907-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj41a01; wu:fj41a01
    Summary
    Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in several cellular components, including cytoplasm; endomembrane system; and intracellular membrane-bounded organelle. Orthologous to human SFT2D3 (SFT2 domain containing 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See sft2d3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (5406238..5407884)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (5494356..5496002)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene si:ch1073-184j22.1 Neighboring gene si:ch1073-184j22.2 Neighboring gene WD repeat domain 33 Neighboring gene dual specificity phosphatase 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The earliest transcribed zygotic genes are short, newly evolved, and different across species. Heyn P, et al. Cell Rep, 2014 Jan 30. PMID 24440719
    2. Identification of zygotic genes expressed at the midblastula transition in zebrafish. O'Boyle S, et al. Biochem Biophys Res Commun, 2007 Jun 29. PMID 17490614
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    vesicle transport protein SFT2C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163995.1 → NP_001157467.1  vesicle transport protein SFT2C

      Status: VALIDATED

      Source sequence(s)
      FP016178
      UniProtKB/TrEMBL
      A0A8M1NV46, X1WFG3
      Related
      ENSDARP00000128967.1, ENSDART00000154167.2
      Conserved Domains (1) summary
      pfam04178
      Location:100 → 205
      Got1; Got1/Sft2-like family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      5406238..5407884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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