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    si:ch73-103b11.2 si:ch73-103b11.2 [ Danio rerio (zebrafish) ]

    Gene ID: 562530, updated on 4-Jan-2025

    Summary

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    Official Symbol
    si:ch73-103b11.2provided by ZNC
    Official Full Name
    si:ch73-103b11.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080917-14
    See related
    AllianceGenome:ZFIN:ZDB-GENE-080917-14
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7154419
    Summary
    Is expressed in habenula; lens; and solid lens vesicle. Orthologous to human MPRIP (myosin phosphatase Rho interacting protein). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See si:ch73-103b11.2 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (39227031..39335007)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (39339101..39447051)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 1-like Neighboring gene essential meiotic structure-specific endonuclease subunit 2 Neighboring gene potassium inwardly rectifying channel subfamily J member 12a Neighboring gene protein starmaker-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    protein outspread

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      39227031..39335007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005162902.5 → XP_005162959.1  protein outspread isoform X2

      See identical proteins and their annotated locations for XP_005162959.1

      UniProtKB/TrEMBL
      A0A8M3AW87
      Conserved Domains (4) summary
      COG0419
      Location:1847 → 2413
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01236
      Location:19 → 154
      PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
      cd13275
      Location:552 → 653
      PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
      pfam00169
      Location:552 → 645
      PH; PH domain

    2. XM_009297658.4 → XP_009295933.1  protein outspread isoform X2

      See identical proteins and their annotated locations for XP_009295933.1

      UniProtKB/TrEMBL
      A0A8M3AW87
      Conserved Domains (4) summary
      COG0419
      Location:1847 → 2413
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01236
      Location:19 → 154
      PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
      cd13275
      Location:552 → 653
      PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
      pfam00169
      Location:552 → 645
      PH; PH domain

    3. XM_068217285.1 → XP_068073386.1  protein outspread isoform X4

    4. XM_068217286.1 → XP_068073387.1  protein outspread isoform X4

    5. XM_005162900.5 → XP_005162957.1  protein outspread isoform X1

      UniProtKB/TrEMBL
      A0A8M2B9V7
      Conserved Domains (4) summary
      COG0419
      Location:1847 → 2413
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01236
      Location:19 → 154
      PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
      cd13275
      Location:552 → 653
      PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
      pfam00169
      Location:552 → 645
      PH; PH domain

    6. XM_005162901.5 → XP_005162958.1  protein outspread isoform X3

      UniProtKB/TrEMBL
      A0A8M2B9W3
      Conserved Domains (4) summary
      COG0419
      Location:1834 → 2400
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01236
      Location:19 → 154
      PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
      cd13275
      Location:552 → 653
      PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
      pfam00169
      Location:552 → 645
      PH; PH domain

    7. XM_005162903.5 → XP_005162960.1  protein outspread isoform X5

      UniProtKB/TrEMBL
      A0A8M2B9W0, A0A8M9PUP2
      Conserved Domains (4) summary
      COG0419
      Location:1685 → 2251
      SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
      cd01236
      Location:19 → 154
      PH_RIP; Rho-Interacting Protein Pleckstrin homology (PH) domain
      cd13275
      Location:390 → 491
      PH_M-RIP; Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain
      pfam00169
      Location:390 → 483
      PH; PH domain
    Nucleotide Protein Strain
    Heading Accession and Version

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