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    • Showing Current items.

    si:ch211-198m1.1 si:ch211-198m1.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100535597, updated on 12-Sep-2024

    Summary

    Official Symbol
    si:ch211-198m1.1provided by ZNC
    Official Full Name
    si:ch211-198m1.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091204-181
    See related
    Ensembl:ENSDARG00000093192 AllianceGenome:ZFIN:ZDB-GENE-091204-181
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    NEW
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    Genomic context

    See si:ch211-198m1.1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (18936005..18967662)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (18786265..18817922)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD41 Neighboring gene transportin 2a Neighboring gene transmembrane protein 104 Neighboring gene uncharacterized LOC137490529 Neighboring gene glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca Neighboring gene regulatory factor X, 1a (influences HLA class II expression)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC100535597

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328094.1NP_001315023.1  uncharacterized protein LOC100535597

      Status: VALIDATED

      Source sequence(s)
      BM183236, CU151886, EH541975, EH548502, EH563119
      UniProtKB/TrEMBL
      A0A8M1P4D3, E9QBA2
      Related
      ENSDARP00000119175.1, ENSDART00000140330.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      18936005..18967662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)