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    si:ch73-299h12.9 si:ch73-299h12.9 [ Danio rerio (zebrafish) ]

    Gene ID: 557562, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch73-299h12.9provided by ZNC
    Official Full Name
    si:ch73-299h12.9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081031-87
    See related
    AllianceGenome:ZFIN:ZDB-GENE-081031-87
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch73-299h12.9 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (2359244..2360908, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (2333402..2340252, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene si:ch73-299h12.8 Neighboring gene uncharacterized LOC110438216 Neighboring gene zinc finger protein OZF Neighboring gene si:ch211-241b2.4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    gastrula zinc finger protein XlCGF57.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      2359244..2360908 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_680648.9 → XP_685740.3  gastrula zinc finger protein XlCGF57.1

      UniProtKB/TrEMBL
      A0A8N7UQR0
      Conserved Domains (3) summary
      COG5048
      Location:158 → 279
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:76 → 96
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:88 → 113
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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