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    LOC100002469 zinc finger protein 420 [ Danio rerio (zebrafish) ]

    Gene ID: 100002469, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC100002469
    Gene description
    zinc finger protein 420
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC100002469 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (2463305..2467466, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (2524087..2528516, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene t-complex 1 Neighboring gene inactive serine protease 35 Neighboring gene snail family zinc finger 1b Neighboring gene tumor protein p53 inducible nuclear protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger protein 420

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      2463305..2467466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001336834.8 → XP_001336870.2  zinc finger protein 420

      UniProtKB/TrEMBL
      A0A8M1PS56
      Conserved Domains (3) summary
      COG5048
      Location:75 → 452
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:23 → 43
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:399 → 424
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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