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    nop16 NOP16 nucleolar protein homolog (yeast) [ Danio rerio (zebrafish) ]

    Gene ID: 436807, updated on 9-Dec-2024

    Summary

    Official Symbol
    nop16provided by ZNC
    Official Full Name
    NOP16 nucleolar protein homolog (yeast)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-267
    See related
    Ensembl:ENSDARG00000044402 AllianceGenome:ZFIN:ZDB-GENE-040718-267
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:92910
    Summary
    Predicted to be involved in ribosomal large subunit biogenesis. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in several structures, including head; immature eye; liver; midbrain; and pectoral fin. Orthologous to human NOP16 (NOP16 nucleolar protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See nop16 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (36612439..36619599, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (36927259..36934419, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene WW and C2 domain containing 1 Neighboring gene ADP-ribosylation factor-like 10 Neighboring gene uncharacterized LOC137488870 Neighboring gene G protein-coupled receptor kinase 6 Neighboring gene proline rich 7, synaptic

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in ribosomal large subunit biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002534.1NP_001002534.1  nucleolar protein 16

      See identical proteins and their annotated locations for NP_001002534.1

      Status: PROVISIONAL

      Source sequence(s)
      BC076362
      UniProtKB/Swiss-Prot
      Q6DGI3
      Related
      ENSDARP00000065207.4, ENSDART00000065208.5
      Conserved Domains (1) summary
      pfam09420
      Location:37148
      Nop16; Ribosome biogenesis protein Nop16

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      36612439..36619599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)