viml vimentin like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: vimlprovided by ZNC
Official Full Name: vimentin likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1743
See related: Ensembl:ENSDARG00000044501 AllianceGenome:ZFIN:ZDB-GENE-040426-1743
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:73275
Summary: Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in intermediate filament organization. Predicted to be active in several cellular components, including axon; intermediate filament; and plasma membrane. Human ortholog(s) of this gene implicated in atherosclerosis; autoimmune disease (multiple); and cataract 30. Orthologous to human VIM (vimentin). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 2

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (50391331..50409763)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (50657101..50675533)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info
enables structural constituent of cytoskeleton	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in intermediate filament organization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in axon	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
is_active_in intermediate filament	IBA Inferred from Biological aspect of Ancestor more info
located_in intermediate filament	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: vimentin like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200773.1 → NP_957067.1 vimentin like

See identical proteins and their annotated locations for NP_957067.1

Status: PROVISIONAL

Source sequence(s)

BC059604

UniProtKB/TrEMBL

Q6PBS2

Related

ENSDARP00000088880.2, ENSDART00000098108.5

Conserved Domains (2) summary

pfam00038
Location:83 → 391

Filament; Intermediate filament protein

pfam04732
Location:1 → 81

Filament_head; Intermediate filament head (DNA binding) region