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    vsig8a V-set and immunoglobulin domain containing 8a [ Danio rerio (zebrafish) ]

    Gene ID: 550503, updated on 9-Dec-2024

    Summary

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    Official Symbol
    vsig8aprovided by ZNC
    Official Full Name
    V-set and immunoglobulin domain containing 8aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-338
    See related
    Ensembl:ENSDARG00000054050 AllianceGenome:ZFIN:ZDB-GENE-050417-338
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:110326
    Summary
    Orthologous to human VSIG8 (V-set and immunoglobulin domain containing 8). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See vsig8a in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (19523443..19551118)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (19568405..19593684)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat transmembrane neuronal 4 like 1 Neighboring gene si:ch211-127i16.2 Neighboring gene uncharacterized LOC108191473 Neighboring gene uncharacterized LOC137496578 Neighboring gene ATPase H+ transporting V1 subunit B2 Neighboring gene wu:fi09b08

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    V-set and immunoglobulin domain-containing protein 8a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017805.2 → NP_001017805.2  V-set and immunoglobulin domain-containing protein 8a isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, uses an alternate translation start site, and uses an alternate splice site in the 5' coding region compared to variant 1. The encoded isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
      Source sequence(s)
      CABZ01059627, CABZ01059628, CABZ01059629
      Related
      ENSDARP00000134709.2, ENSDART00000158512.2

    2. NM_001328510.1 → NP_001315439.1  V-set and immunoglobulin domain-containing protein 8a isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      CABZ01059627, CABZ01059628, CABZ01059629
      Related
      ENSDARP00000136962.1, ENSDART00000162912.3
      Conserved Domains (3) summary
      smart00410
      Location:54 → 165
      IG_like; Immunoglobulin like
      pfam07686
      Location:53 → 165
      V-set; Immunoglobulin V-set domain
      pfam13927
      Location:183 → 243
      Ig_3; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      19523443..19551118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223796.1 → XP_068079897.1  V-set and immunoglobulin domain-containing protein 8a isoform X1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394777.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      131149..152821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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