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    mrpl9 mitochondrial ribosomal protein L9 [ Danio rerio (zebrafish) ]

    Gene ID: 572170, updated on 9-Dec-2024

    Summary

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    Official Symbol
    mrpl9provided by ZNC
    Official Full Name
    mitochondrial ribosomal protein L9provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070717-4
    See related
    Ensembl:ENSDARG00000063249 AllianceGenome:ZFIN:ZDB-GENE-070717-4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:6902315; wu:fa98b03; si:ch211-210h11.9
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Orthologous to human MRPL9 (mitochondrial ribosomal protein L9). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See mrpl9 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (7518867..7525403, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (7599942..7606478, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene proline rich mitotic checkpoint control factor Neighboring gene uncharacterized LOC137488469 Neighboring gene uncharacterized LOC137488468 Neighboring gene limb and CNS expressed 1 like Neighboring gene pre-B-cell leukemia homeobox interacting protein 1a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    large ribosomal subunit protein bL9m

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100044.2 → NP_001093514.2  large ribosomal subunit protein bL9m

      See identical proteins and their annotated locations for NP_001093514.2

      Status: PROVISIONAL

      Source sequence(s)
      BC153667
      UniProtKB/TrEMBL
      A8E5P5
      Related
      ENSDARP00000086688.5, ENSDART00000092256.6
      Conserved Domains (2) summary
      PRK00137
      Location:80 → 212
      rplI; 50S ribosomal protein L9; Reviewed
      pfam01281
      Location:81 → 126
      Ribosomal_L9_N; Ribosomal protein L9, N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      7518867..7525403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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