U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    vps52 VPS52 subunit of GARP complex [ Danio rerio (zebrafish) ]

    Gene ID: 556724, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    vps52provided by ZNC
    Official Full Name
    VPS52 subunit of GARP complexprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-010430-2
    See related
    Ensembl:ENSDARG00000099258 AllianceGenome:ZFIN:ZDB-GENE-010430-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    sacm2l; fb94c11; wu:fb94c11
    Summary
    Predicted to enable syntaxin binding activity. Predicted to be involved in endosomal transport and vacuolar transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus. Predicted to be part of GARP complex. Orthologous to human VPS52 (VPS52 subunit of GARP complex). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See vps52 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (18627288..18649750)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (19164196..19186911)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene FKBP prolyl isomerase 10a Neighboring gene uncharacterized LOC103909220 Neighboring gene ribosomal protein S18 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 1, like 3 Neighboring gene uncharacterized LOC568019 Neighboring gene lymphocyte antigen-6, epidermis

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Conservation of Mhc class III region synteny between zebrafish and human as determined by radiation hybrid mapping. Sültmann H, et al. J Immunol, 2000 Dec 15. PMID 11120825
    2. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables syntaxin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in endocytic recycling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in lysosomal transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of GARP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    vacuolar protein sorting-associated protein 52 homolog
    Names
    vacuolar protein sorting 52 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      18627288..18649750
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215267.1 → XP_068071368.1  vacuolar protein sorting-associated protein 52 homolog isoform X1

      UniProtKB/TrEMBL
      A0A0R4IY52, A0A8M3AK60
      Related
      ENSDARP00000140259.1, ENSDART00000167245.2

    2. XM_068215268.1 → XP_068071369.1  vacuolar protein sorting-associated protein 52 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8M9PSC6
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools