U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    rnf17 ring finger protein 17 [ Danio rerio (zebrafish) ]

    Gene ID: 334519, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rnf17provided by ZNC
    Official Full Name
    ring finger protein 17provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6451
    See related
    Ensembl:ENSDARG00000056387 AllianceGenome:ZFIN:ZDB-GENE-030131-6451
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    TDRD4; im:7147535; wu:fj98c04
    Summary
    Predicted to enable metal ion binding activity. Is expressed in gut; pharynx; and primordial germ cell. Orthologous to human RNF17 (ring finger protein 17). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rnf17 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (29548636..29571230)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (29737822..29760484)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene ferredoxin 1 Neighboring gene Rho GTPase activating protein 20 Neighboring gene centrosome assembly and centriole elongation protein Neighboring gene mcf.2 cell line derived transforming sequence-like b

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparative studies on duplicated tdrd7 paralogs in teleosts: Molecular evolution caused neo-functionalization. Wang B, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2019 Jun. PMID 31059868
    2. Tdrd12 Is Essential for Germ Cell Development and Maintenance in Zebrafish. Dai X, et al. Int J Mol Sci, 2017 Jun 7. PMID 28590408, Free PMC Article
    3. Control over the morphology and segregation of Zebrafish germ cell granules during embryonic development. Strasser MJ, et al. BMC Dev Biol, 2008 May 28. PMID 18507824, Free PMC Article
    4. A Germline-Specific Regulator of Mitochondrial Fusion is Required for Maintenance and Differentiation of Germline Stem and Progenitor Cells. Zhang R, et al. Adv Sci (Weinh), 2022 Dec. PMID 36257818, Free PMC Article
    5. An evolutionary approach to recover genes predominantly expressed in the testes of the zebrafish, chicken and mouse. Fouchécourt S, et al. BMC Evol Biol, 2019 Jul 3. PMID 31269894, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RING finger protein 17

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      29548636..29571230
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478968.2 → XP_021334643.1  RING finger protein 17

      UniProtKB/TrEMBL
      A0A8M9Q552, F1R3C5, F1R4H5
      Related
      ENSDARP00000116232.2, ENSDART00000132295.4
      Conserved Domains (2) summary
      pfam00567
      Location:633 → 746
      TUDOR; Tudor domain
      cl17238
      Location:8 → 60
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394759.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      153751..176345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692362.7 → XP_697454.3  RING finger protein 17

      UniProtKB/TrEMBL
      A0A8M9Q552, F1R3C5, F1R4H5
      Conserved Domains (2) summary
      pfam00567
      Location:633 → 746
      TUDOR; Tudor domain
      cl17238
      Location:8 → 60
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.