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    gdpd3a glycerophosphodiester phosphodiesterase domain containing 3a [ Danio rerio (zebrafish) ]

    Gene ID: 406482, updated on 9-Dec-2024

    Summary

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    Official Symbol
    gdpd3aprovided by ZNC
    Official Full Name
    glycerophosphodiester phosphodiesterase domain containing 3aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2279
    See related
    Ensembl:ENSDARG00000074466 AllianceGenome:ZFIN:ZDB-GENE-040426-2279
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    gdpd3; gdpd1l; zgc:77781; wu:fl20d04
    Summary
    Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain; lens; and pronephric duct. Orthologous to human GDPD3 (glycerophosphodiester phosphodiesterase domain containing 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See gdpd3a in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (26193592..26204572, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (26062721..26073701, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene si:ch211-11k18.4 Neighboring gene yippee-like 3 Neighboring gene mitogen-activated protein kinase 3 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables lysophospholipase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphoric diester hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within brain development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in glycerophospholipid catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lysophospholipase D GDPD3a
    Names
    glycerophosphodiester phosphodiesterase domain containing 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213201.1 → NP_998366.1  lysophospholipase D GDPD3a

      See identical proteins and their annotated locations for NP_998366.1

      Status: PROVISIONAL

      Source sequence(s)
      BC064306
      UniProtKB/TrEMBL
      A0A8N1TXU9, Q6P2T3
      Related
      ENSDARP00000094523.4, ENSDART00000103748.6
      Conserved Domains (2) summary
      cd08612
      Location:13 → 310
      GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
      pfam03009
      Location:44 → 301
      GDPD; Glycerophosphoryl diester phosphodiesterase family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      26193592..26204572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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