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    Gfod2 Gfo/Idh/MocA-like oxidoreductase domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307801, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gfod2provided by RGD
    Official Full Name
    Gfo/Idh/MocA-like oxidoreductase domain containing 2provided by RGD
    Primary source
    RGD:1311198
    See related
    AllianceGenome:RGD:1311198
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311198
    Summary
    Predicted to enable nucleotide binding activity and oxidoreductase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human GFOD2 (Gfo/Idh/MocA-like oxidoreductase domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Adrenal (RPKM 60.4), Lung (RPKM 28.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Gfod2 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (50508626..50556945, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33599689..33647060, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37678488..37725623, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome 16 open reading frame 86 Neighboring gene par-6 family cell polarity regulator alpha Neighboring gene enkurin domain containing 1 Neighboring gene small nuclear ribonucleoprotein polypeptide G, pseudogene 2 Neighboring gene uncharacterized LOC134483349 Neighboring gene RAN binding protein 10 Neighboring gene uncharacterized LOC108348930 Neighboring gene translin-associated factor X interacting protein 1 Neighboring gene centromere protein T

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Transcriptome-based systematic identification of extracellular matrix proteins. Manabe R, et al. Proc Natl Acad Sci U S A, 2008 Sep 2. PMID 18757743, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within extracellular matrix organization ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in extracellular matrix IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in extracellular matrix ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    glucose-fructose oxidoreductase domain-containing protein 2
    Names
    glucose-fructose oxidoreductase domain containing 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107421.1 → NP_001100891.1  glucose-fructose oxidoreductase domain-containing protein 2

      See identical proteins and their annotated locations for NP_001100891.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473972
      UniProtKB/TrEMBL
      B1WBV3, F7EU20
      Conserved Domains (1) summary
      COG0673
      Location:7 → 365
      MviM; Predicted dehydrogenase [General function prediction only]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      50508626..50556945 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063278026.1 → XP_063134096.1  glucose-fructose oxidoreductase domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      B1WBV3, F7EU20

    2. XM_063278025.1 → XP_063134095.1  glucose-fructose oxidoreductase domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      B1WBV3, F7EU20

    3. XM_063278027.1 → XP_063134097.1  glucose-fructose oxidoreductase domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      B1WBV3, F7EU20

    4. XM_039097732.2 → XP_038953660.1  glucose-fructose oxidoreductase domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      B1WBV3, F7EU20
      Conserved Domains (1) summary
      COG0673
      Location:7 → 365
      MviM; Predicted dehydrogenase [General function prediction only]

    5. XM_063278028.1 → XP_063134098.1  glucose-fructose oxidoreductase domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      B1WBV3, F7EU20

    6. XM_063278024.1 → XP_063134094.1  glucose-fructose oxidoreductase domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      B1WBV3, F7EU20

    7. XM_063278029.1 → XP_063134099.1  glucose-fructose oxidoreductase domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      B1WBV3, F7EU20

    8. XM_039097734.2 → XP_038953662.1  glucose-fructose oxidoreductase domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      B1WBV3, F7EU20
      Conserved Domains (1) summary
      COG0673
      Location:7 → 365
      MviM; Predicted dehydrogenase [General function prediction only]
    Nucleotide Protein Strain
    Heading Accession and Version

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