U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gpatch2 G patch domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289362, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gpatch2provided by RGD
    Official Full Name
    G patch domain containing 2provided by RGD
    Primary source
    RGD:1308865
    See related
    EnsemblRapid:ENSRNOG00000002512 AllianceGenome:RGD:1308865
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Gpatc2
    Summary
    Predicted to enable nucleic acid binding activity. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human GPATCH2 (G-patch domain containing 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 57.4), Kidney (RPKM 49.4) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gpatch2 in Genome Data Viewer
    Location:
    13q26
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (101316413..101457109)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (98784993..98925696)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (105684300..105824405)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102548113 Neighboring gene spermatogenesis associated 17 Neighboring gene uncharacterized LOC120096343 Neighboring gene uncharacterized LOC134481542 Neighboring gene uncharacterized LOC102553391 Neighboring gene large ribosomal subunit protein eL29-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Docking motif-guided mapping of the interactome of protein phosphatase-1. Hendrickx A, et al. Chem Biol, 2009 Apr 24. PMID 19389623
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear speck ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    G patch domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011909.2 → NP_001011909.1  G patch domain-containing protein 2 isoform 3

      See identical proteins and their annotated locations for NP_001011909.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      Q6AY15

    2. NM_001401368.1 → NP_001388297.1  G patch domain-containing protein 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A8I6GC35, F7FA15
      Related
      ENSRNOP00000084678.1, ENSRNOT00000094733.2

    3. NM_001401369.1 → NP_001388298.1  G patch domain-containing protein 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A8I6GCS0, A6JGT3, F7FA15
      Related
      ENSRNOP00000085328.1, ENSRNOT00000119086.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      101316413..101457109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039090591.2 → XP_038946519.1  G patch domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      F7FA15
      Related
      ENSRNOP00000044043.3, ENSRNOT00000040543.5

    2. XM_039090592.2 → XP_038946520.1  G patch domain-containing protein 2 isoform X4

      UniProtKB/TrEMBL
      F7FA15

    3. XM_063272186.1 → XP_063128256.1  G patch domain-containing protein 2 isoform X5

      UniProtKB/TrEMBL
      F7FA15

    4. XM_039090596.2 → XP_038946524.1  G patch domain-containing protein 2 isoform X6

      UniProtKB/TrEMBL
      F7FA15

    5. XM_008769846.4 → XP_008768068.1  G patch domain-containing protein 2 isoform X7

      UniProtKB/TrEMBL
      A0A8I6ADI7
      Related
      ENSRNOP00000092365.1, ENSRNOT00000105333.2

    6. XM_039090587.1 → XP_038946515.1  G patch domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A6JGT5, F7FA15
      Conserved Domains (1) summary
      pfam01585
      Location:444 → 485
      G-patch; G-patch domain

    7. XM_039090590.2 → XP_038946518.1  G patch domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A6JGT5, F7FA15
      Conserved Domains (1) summary
      pfam01585
      Location:444 → 485
      G-patch; G-patch domain

    8. XM_063272184.1 → XP_063128254.1  G patch domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      F7FA15

    9. XM_063272187.1 → XP_063128257.1  G patch domain-containing protein 2 isoform X8

    RNA

    1. XR_005492230.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools