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    Fndc10 fibronectin type III domain containing 10 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680656, updated on 27-Nov-2024

    Summary

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    Symbol
    Fndc10provided by RGD
    Full Name
    fibronectin type III domain containing 10provided by RGD
    Primary source
    RGD:1589420
    See related
    EnsemblRapid:ENSRNOG00000030447 AllianceGenome:RGD:1589420
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human FNDC10 (fibronectin type III domain containing 10). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See Fndc10 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (171581960..171584519)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (166299587..166311477)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (173139345..173141564)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation elongation factor 1 gamma, pseudogene 6 Neighboring gene transfer RNA serine (anticodon AGA) 54 Neighboring gene SSU72 homolog, RNA polymerase II CTD phosphatase Neighboring gene U6 spliceosomal RNA Neighboring gene transmembrane protein 240 Neighboring gene ATPase family, AAA domain containing 3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, et al. Nature, 2004 Apr 1. PMID 15057822
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    fibronectin type III domain-containing protein 10
    Names
    Fibronectin type-III domain-containing transmembrane protein C1orf233 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419679.1 → NP_001406608.1  fibronectin type III domain-containing protein 10 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/Swiss-Prot
      D4A2Q0
      Related
      ENSRNOP00000101778.1, ENSRNOT00000155533.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      171581960..171584519
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288393.1 → XP_063144463.1  fibronectin type III domain-containing protein 10 isoform X1

      UniProtKB/Swiss-Prot
      D4A2Q0
      Related
      ENSRNOP00000100986.1, ENSRNOT00000170981.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D4A2Q0.1 GenPept UniProtKB/Swiss-Prot:D4A2Q0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.