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    Gm10048 predicted gene 10048 [ Mus musculus (house mouse) ]

    Gene ID: 625026, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm10048provided by MGI
    Official Full Name
    predicted gene 10048provided by MGI
    Primary source
    MGI:MGI:3644560
    See related
    AllianceGenome:MGI:3644560
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG625026
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    Genomic context

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    See Gm10048 in Genome Data Viewer
    Location:
    5 B3; 5 26.53 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (49078244..49091528, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene Kv channel interacting protein 4 Neighboring gene STARR-seq mESC enhancer starr_13027 Neighboring gene predicted gene, 52772 Neighboring gene STARR-seq mESC enhancer starr_13028 Neighboring gene STARR-seq mESC enhancer starr_13030 Neighboring gene STARR-seq mESC enhancer starr_13031 Neighboring gene dyskeratosis congenita 1, dyskerin homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_13032 Neighboring gene STARR-seq mESC enhancer starr_13033 Neighboring gene cytochrome c-like Neighboring gene STARR-seq mESC enhancer starr_13034 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000071.7 Chromosome 5 Reference GRCm39 C57BL/6J

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188766.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC102446

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      49078244..49091528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039226.1: Suppressed sequence

      Description
      NM_001039226.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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