Snhg17 small nucleolar RNA host gene 17 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Snhg17provided by MGI
Official Full Name: small nucleolar RNA host gene 17provided by MGI
Primary source: MGI:MGI:1915358
See related: Ensembl:ENSMUSG00000085385 AllianceGenome:MGI:1915358
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 9430008C03Rik
Summary: Involved in gene expression. Acts upstream of or within response to wounding. Is active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Expression: Ubiquitous expression in limb E14.5 (RPKM 8.9), CNS E11.5 (RPKM 7.4) and 28 other tissues See more
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Genomic context

Location:: 2 H1; 2 78.72 cM

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	2	NC_000068.8 (158195620..158203442, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	2	NC_000068.7 (158353700..158361522, complement)

Chromosome 2 - NC_000068.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

LncRNA SNHG17 knockdown promotes Parkin-dependent mitophagy and reduces apoptosis of podocytes through Mst1.
Title: LncRNA SNHG17 knockdown promotes Parkin-dependent mitophagy and reduces apoptosis of podocytes through Mst1.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in gene expression	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within response to wounding	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
is_active_in nucleus	IDA Inferred from Direct Assay more info	PubMed

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

NR_015463.1 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (1) is the longer transcript.

Source sequence(s)

AK046044, AL663063, BU696406, CO043985

Related

ENSMUST00000242851.2
NR_027887.1 RNA Sequence

Status: VALIDATED

Description

Transcript Variant: This variant (2) has two alternate splice sites, as compared to variant 1. It represents the shorter transcript.

Source sequence(s)

AK007971, AK046044, AL663063, CO043985

Related

ENSMUST00000133449.10