Zbtb9 zinc finger and BTB domain containing 9 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Zbtb9provided by MGI
Official Full Name: zinc finger and BTB domain containing 9provided by MGI
Primary source: MGI:MGI:1918022
See related: Ensembl:ENSMUSG00000079605 AllianceGenome:MGI:1918022
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 3930402F13Rik
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including 1st branchial arch maxillary component; eye; genitourinary system; heart; and hepatic primordium. Orthologous to human ZBTB9 (zinc finger and BTB domain containing 9). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Ubiquitous expression in thymus adult (RPKM 18.5), spleen adult (RPKM 9.3) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 17; 17 A3.3

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	17	NC_000083.7 (27192153..27195177)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	17	NC_000083.6 (26973179..26976203)

Chromosome 17 - NC_000083.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables identical protein binding	IEA Inferred from Electronic Annotation more info
enables identical protein binding	ISO Inferred from Sequence Orthology more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger and BTB domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001005916.2 → NP_001005916.1 zinc finger and BTB domain-containing protein 9

See identical proteins and their annotated locations for NP_001005916.1

Status: PROVISIONAL

Source sequence(s)

BC049933

Consensus CDS

CCDS37520.1

UniProtKB/Swiss-Prot

Q3U3B2, Q8CDC7, Q9CYQ0

Related

ENSMUSP00000112778.2, ENSMUST00000120016.3

Conserved Domains (4) summary

smart00225
Location:49 → 142

BTB; Broad-Complex, Tramtrack and Bric a brac

sd00017
Location:374 → 391

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:399 → 419

zf-C2H2; Zinc finger, C2H2 type

pfam00651
Location:38 → 138

BTB; BTB/POZ domain