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    Apol7c apolipoprotein L 7c [ Mus musculus (house mouse) ]

    Gene ID: 108956, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Apol7cprovided by MGI
    Official Full Name
    apolipoprotein L 7cprovided by MGI
    Primary source
    MGI:MGI:1920912
    See related
    Ensembl:ENSMUSG00000044309 AllianceGenome:MGI:1920912
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2210421G13Rik
    Summary
    Predicted to enable lipid binding activity. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human APOL2 (apolipoprotein L2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in large intestine adult (RPKM 17.2), spleen adult (RPKM 13.7) and 8 other tissues See more
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    Genomic context

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    See Apol7c in Genome Data Viewer
    Location:
    15 D3; 15 36.4 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (77409052..77417540, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (77524852..77533335, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene apolipoprotein L 10A Neighboring gene apolipoprotein L 11a Neighboring gene STARR-seq mESC enhancer starr_39107 Neighboring gene RIKEN cDNA 1700025B11 gene Neighboring gene apolipoprotein L 10B Neighboring gene STARR-seq mESC enhancer starr_39108

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables lipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    apolipoprotein L 7c

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175391.4 → NP_780600.1  apolipoprotein L 7c

      See identical proteins and their annotated locations for NP_780600.1

      Status: PROVISIONAL

      Source sequence(s)
      AL591864
      Consensus CDS
      CCDS37127.1
      UniProtKB/TrEMBL
      Q8C6E1
      Related
      ENSMUSP00000050745.6, ENSMUST00000062562.7
      Conserved Domains (1) summary
      pfam05461
      Location:20 → 367
      ApoL; Apolipoprotein L

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      77409052..77417540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520277.5 → XP_006520340.1  apolipoprotein L 7c isoform X1

      See identical proteins and their annotated locations for XP_006520340.1

      UniProtKB/TrEMBL
      Q8C6E1
      Conserved Domains (1) summary
      pfam05461
      Location:20 → 367
      ApoL; Apolipoprotein L
    Nucleotide Protein Strain
    Heading Accession and Version

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