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    Ccdc85a coiled-coil domain containing 85A [ Mus musculus (house mouse) ]

    Gene ID: 216613, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc85aprovided by MGI
    Official Full Name
    coiled-coil domain containing 85Aprovided by MGI
    Primary source
    MGI:MGI:2445069
    See related
    Ensembl:ENSMUSG00000032878 AllianceGenome:MGI:2445069
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in adherens junction. Is expressed in central nervous system and dorsal root ganglion. Orthologous to human CCDC85A (coiled-coil domain containing 85A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in CNS E18 (RPKM 3.5), frontal lobe adult (RPKM 3.1) and 13 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ccdc85a in Genome Data Viewer
    Location:
    11 A3.3; 11 16.22 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (28335688..28537234, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (28385684..28587234, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_28995 Neighboring gene STARR-seq mESC enhancer starr_28996 Neighboring gene STARR-seq mESC enhancer starr_28997 Neighboring gene predicted gene 12080 Neighboring gene STARR-seq mESC enhancer starr_28998 Neighboring gene STARR-seq mESC enhancer starr_28999 Neighboring gene STARR-seq mESC enhancer starr_29000 Neighboring gene STARR-seq mESC enhancer starr_29001 Neighboring gene STARR-seq mESC enhancer starr_29003 Neighboring gene STARR-seq mESC enhancer starr_29004 Neighboring gene STARR-seq mESC enhancer starr_29005 Neighboring gene STARR-seq mESC enhancer starr_29006 Neighboring gene cytochrome b5 domain containing 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_29007 Neighboring gene STARR-seq mESC enhancer starr_29008 Neighboring gene STARR-seq mESC enhancer starr_29009 Neighboring gene STARR-seq mESC enhancer starr_29010 Neighboring gene STARR-seq mESC enhancer starr_29011 Neighboring gene RIKEN cDNA 2810471M01 gene Neighboring gene predicted gene, 34075 Neighboring gene microRNA 217 host gene Neighboring gene microRNA 216b Neighboring gene microRNA 216c

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    Interactions

    General gene information

    Clone Names

    • E030025D05Rik

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in adherens junction  
    located_in adherens junction  

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 85A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001166661.3NP_001160133.1  coiled-coil domain-containing protein 85A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL929280, BX255910
      Consensus CDS
      CCDS48760.1
      UniProtKB/Swiss-Prot
      Q5SP85
      Related
      ENSMUSP00000044649.9, ENSMUST00000042534.15
      Conserved Domains (1) summary
      pfam10226
      Location:29202
      DUF2216; Uncharacterized conserved proteins (DUF2216)
    2. NM_001346759.2NP_001333688.1  coiled-coil domain-containing protein 85A isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL929280, BX255910
      Consensus CDS
      CCDS83786.1
      UniProtKB/TrEMBL
      E0CX32
      Related
      ENSMUSP00000124972.2, ENSMUST00000146385.9
    3. NM_001404024.1NP_001390953.1  coiled-coil domain-containing protein 85A isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL929280, BX255910
    4. NM_001404025.1NP_001390954.1  coiled-coil domain-containing protein 85A isoform 5

      Status: VALIDATED

      Source sequence(s)
      AL929280, BX255910
    5. NM_001404026.1NP_001390955.1  coiled-coil domain-containing protein 85A isoform 6

      Status: VALIDATED

      Source sequence(s)
      AL929280, BX255910
    6. NM_001404027.1NP_001390956.1  coiled-coil domain-containing protein 85A isoform 7

      Status: VALIDATED

      Source sequence(s)
      AL929280, BX255910
    7. NM_181577.6NP_853555.2  coiled-coil domain-containing protein 85A isoform 1

      See identical proteins and their annotated locations for NP_853555.2

      Status: VALIDATED

      Source sequence(s)
      AL929280, BX255910
      Consensus CDS
      CCDS24489.1
      UniProtKB/Swiss-Prot
      Q5SP85, Q69Z68, Q6NZL9, Q8BGZ5, Q8BLC5, Q8VCC5
      Related
      ENSMUSP00000090941.4, ENSMUST00000093253.10
      Conserved Domains (1) summary
      pfam10226
      Location:29202
      DUF2216; Uncharacterized conserved proteins (DUF2216)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      28335688..28537234 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006514657.5XP_006514720.1  coiled-coil domain-containing protein 85A isoform X3

      Conserved Domains (3) summary
      PHA03269
      Location:137255
      PHA03269; envelope glycoprotein C; Provisional
      pfam10226
      Location:6122
      CCDC85; CCDC85 family
      pfam15449
      Location:137430
      Retinal; Retinal protein
    2. XM_011243694.3XP_011241996.1  coiled-coil domain-containing protein 85A isoform X7

      Conserved Domains (2) summary
      PHA03269
      Location:217335
      PHA03269; envelope glycoprotein C; Provisional
      pfam10226
      Location:29202
      CCDC85; CCDC85 family
    3. XM_036156536.1XP_036012429.1  coiled-coil domain-containing protein 85A isoform X4

      Conserved Domains (2) summary
      PHA03269
      Location:217335
      PHA03269; envelope glycoprotein C; Provisional
      pfam10226
      Location:29202
      CCDC85; CCDC85 family
    4. XM_036156537.1XP_036012430.1  coiled-coil domain-containing protein 85A isoform X5

      Conserved Domains (2) summary
      PHA03269
      Location:217335
      PHA03269; envelope glycoprotein C; Provisional
      pfam10226
      Location:29202
      CCDC85; CCDC85 family

    RNA

    1. XR_004936912.1 RNA Sequence

    2. XR_004936910.1 RNA Sequence

    3. XR_004936911.1 RNA Sequence

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