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    Heatr4 HEAT repeat containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 101055670, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Heatr4provided by MGI
    Official Full Name
    HEAT repeat containing 4provided by MGI
    Primary source
    MGI:MGI:4937307
    See related
    Ensembl:ENSMUSG00000090843 AllianceGenome:MGI:4937307
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm17673
    Summary
    Predicted to enable oxidoreductase activity. Orthologous to human HEATR4 (HEAT repeat containing 4). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 12.4), adrenal adult (RPKM 6.5) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Heatr4 in Genome Data Viewer
    Location:
    12 D1; 12 38.98 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (83991987..84031643, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (83945213..83984871, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene NUMB endocytic adaptor protein Neighboring gene endothelin converting enzyme 2 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E474 Neighboring gene predicted gene, 31386 Neighboring gene ribosomal oxygenase 1 Neighboring gene STARR-seq mESC enhancer starr_32720 Neighboring gene STARR-seq mESC enhancer starr_32721 Neighboring gene acyl-CoA thioesterase 2 Neighboring gene acyl-CoA thioesterase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    HEAT repeat-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001376939.1 → NP_001363868.1  HEAT repeat-containing protein 4

      Status: VALIDATED

      Source sequence(s)
      AC133183
      UniProtKB/TrEMBL
      E9Q357
      Related
      ENSMUSP00000129832.3, ENSMUST00000164935.3
      Conserved Domains (2) summary
      sd00044
      Location:679 → 720
      HEAT; HEAT repeat [structural motif]
      pfam13646
      Location:678 → 800
      HEAT_2; HEAT repeats

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      83991987..84031643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157137.1 → XP_036013030.1  HEAT repeat-containing protein 4 isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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