U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tvp23b trans-golgi network vesicle protein 23 homolog B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 687358, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tvp23bprovided by RGD
    Official Full Name
    trans-golgi network vesicle protein 23 homolog Bprovided by RGD
    Primary source
    RGD:1586539
    See related
    EnsemblRapid:ENSRNOG00000050649 AllianceGenome:RGD:1586539
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam18b2
    Summary
    Predicted to be involved in protein secretion and vesicle-mediated transport. Predicted to be active in Golgi membrane. Orthologous to several human genes including TVP23B (trans-golgi network vesicle protein 23 homolog B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 301.4), Liver (RPKM 275.6) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tvp23b in Genome Data Viewer
    Location:
    10q23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (48053005..48067326)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (47553789..47565203)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (49299125..49312814)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing 16 Neighboring gene F-box and WD repeat domain containing 10 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC120095116 Neighboring gene uncharacterized LOC102552952

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC187848

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in protein secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Golgi apparatus membrane protein TVP23 homolog B
    Names
    family with sequence similarity 18, member B2
    trans-golgi network vesicle protein 23 B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107568.3 → NP_001101038.2  Golgi apparatus membrane protein TVP23 homolog B

      See identical proteins and their annotated locations for NP_001101038.2

      Status: VALIDATED

      Source sequence(s)
      BC168178, CK483802
      UniProtKB/TrEMBL
      A6HFC7, A6HFC9, M0R766
      Related
      ENSRNOP00000065284.1, ENSRNOT00000074853.3
      Conserved Domains (1) summary
      pfam05832
      Location:32 → 174
      DUF846; Eukaryotic protein of unknown function (DUF846)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      48053005..48067326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039086835.2 → XP_038942763.1  Golgi apparatus membrane protein TVP23 homolog B isoform X1

      Conserved Domains (1) summary
      pfam05832
      Location:32 → 154
      DUF846; Eukaryotic protein of unknown function (DUF846)

    2. XM_017597529.3 → XP_017453018.1  Golgi apparatus membrane protein TVP23 homolog B isoform X2

    RNA

    1. XR_010055246.1 RNA Sequence

    2. XR_010055248.1 RNA Sequence

    3. XR_010055245.1 RNA Sequence

    4. XR_010055249.1 RNA Sequence

    5. XR_010055250.1 RNA Sequence

    6. XR_010055247.1 RNA Sequence

    7. XR_010055252.1 RNA Sequence

    8. XR_010055251.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools