NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001136223.3 → NP_001129695.1 REST corepressor 3 isoform a
See identical proteins and their annotated locations for NP_001129695.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes isoform a.
- Source sequence(s)
-
AK302664, AL590101, BU689437, HY024910
- Consensus CDS
-
CCDS44312.1
- UniProtKB/Swiss-Prot
-
Q9P2K3
- Related
- ENSP00000413929.2, ENST00000419091.7
- Conserved Domains (3) summary
-
- pfam00249
Location:347 → 390
- Myb_DNA-binding; Myb-like DNA-binding domain
- pfam01448
Location:59 → 110
- ELM2; ELM2 domain
- cl21498
Location:146 → 190
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
-
NM_001136224.4 → NP_001129696.2 REST corepressor 3 isoform b
See identical proteins and their annotated locations for NP_001129696.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an alternate 3' coding exon compared to variant 1, that causes a frameshift. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AL590101, BC031608, BU689437, DC387352, HY024910
- Consensus CDS
-
CCDS44313.1
- UniProtKB/Swiss-Prot
-
Q9P2K3
- Related
- ENSP00000355973.4, ENST00000367006.8
- Conserved Domains (2) summary
-
- pfam01448
Location:59 → 110
- ELM2; ELM2 domain
- cl21498
Location:146 → 190
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
-
NM_001136225.3 → NP_001129697.1 REST corepressor 3 isoform c
See identical proteins and their annotated locations for NP_001129697.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (c) has a shorter and distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AA831517, AK131312, HY024910
- Consensus CDS
-
CCDS44314.1
- UniProtKB/Swiss-Prot
-
Q9P2K3
- Related
- ENSP00000398558.2, ENST00000452621.6
- Conserved Domains (3) summary
-
- pfam00249
Location:347 → 390
- Myb_DNA-binding; Myb-like DNA-binding domain
- pfam01448
Location:59 → 110
- ELM2; ELM2 domain
- cl21498
Location:146 → 190
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
-
NM_001350069.2 → NP_001336998.1 REST corepressor 3 isoform e
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) contains an alternate in-frame exon in the 5' coding region compared to variant 1. The resulting isoform (e) has the same N- and C-termini, but is longer than isoform a.
- Source sequence(s)
-
AK302664, AL590101, BU689437, DA925839, HY024910
- Conserved Domains (3) summary
-
- pfam00249
Location:379 → 422
- Myb_DNA-binding; Myb-like DNA-binding domain
- pfam01448
Location:59 → 142
- ELM2; ELM2 domain
- cl21498
Location:178 → 222
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
-
NM_001350070.2 → NP_001336999.1 REST corepressor 3 isoform f
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) contains an alternate exon in its 5' UTR, resulting in the use of a downstream start codon compared to variant 1. The resulting isoform (f) has a shorter N-terminus compared to isoform a.
- Source sequence(s)
-
AK302664, AL590101, AL611964, BU689437, DB164963, HY024910
- Conserved Domains (2) summary
-
- pfam00249
Location:226 → 269
- Myb_DNA-binding; Myb-like DNA-binding domain
- cl21498
Location:25 → 69
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
-
NM_018254.5 → NP_060724.1 REST corepressor 3 isoform d
See identical proteins and their annotated locations for NP_060724.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (d) has a shorter N-terminus compared to isoform a.
- Source sequence(s)
-
AK001738, AL590101, BU689437, DA478986
- Consensus CDS
-
CCDS31016.1
- UniProtKB/Swiss-Prot
- B3KYA2, B4DYY7, Q5VT47, Q7L9I5, Q8N5U3, Q9NV83, Q9P2K3
- Related
- ENSP00000355972.4, ENST00000367005.8
- Conserved Domains (3) summary
-
- pfam00249
Location:289 → 332
- Myb_DNA-binding; Myb-like DNA-binding domain
- pfam01448
Location:1 → 52
- ELM2; ELM2 domain
- cl21498
Location:88 → 132
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
RNA
-
NR_146432.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) uses an alternate splice site in its 5' terminal exon and contains an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD)
- Source sequence(s)
-
AK302664, AL590101, BI051857, BU689437, DA334880, HY024910
-
NR_146433.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) contains an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AK302664, AL590101, BI051857, BQ218032, BU689437, DC387352, HY024910
-
NR_146434.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) contains an alternate internal exon, and it 3' terminal exon extends past a splice site that is used in variant 1.. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AA831517, AI380424, AK302664, BI051857, BP221223, BQ218032, DA224160, DC387352, HY024910
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
211259366..211316385
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047425046.1 → XP_047281002.1 REST corepressor 3 isoform X9
- UniProtKB/TrEMBL
-
B4DV59
-
XM_005273191.6 → XP_005273248.1 REST corepressor 3 isoform X1
- Conserved Domains (3) summary
-
- pfam00249
Location:348 → 391
- Myb_DNA-binding; Myb-like DNA-binding domain
- pfam01448
Location:60 → 111
- ELM2; ELM2 domain
- cl21498
Location:147 → 191
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
-
XM_006711442.3 → XP_006711505.1 REST corepressor 3 isoform X4
- Conserved Domains (3) summary
-
- smart00717
Location:146 → 192
- SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
- pfam01448
Location:60 → 111
- ELM2; ELM2 domain
- cl21498
Location:147 → 191
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
-
XM_011509748.3 → XP_011508050.1 REST corepressor 3 isoform X2
- Conserved Domains (4) summary
-
- COG5259
Location:223 → 356
- RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
- pfam00249
Location:322 → 365
- Myb_DNA-binding; Myb-like DNA-binding domain
- pfam01448
Location:60 → 111
- ELM2; ELM2 domain
- cl21498
Location:147 → 191
- SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
-
XM_047425021.1 → XP_047280977.1 REST corepressor 3 isoform X6
-
XM_017001761.3 → XP_016857250.1 REST corepressor 3 isoform X3
-
XM_047425032.1 → XP_047280988.1 REST corepressor 3 isoform X7
-
XM_047425043.1 → XP_047280999.1 REST corepressor 3 isoform X9
- UniProtKB/TrEMBL
-
B4DV59
-
XM_047425052.1 → XP_047281008.1 REST corepressor 3 isoform X11
- UniProtKB/TrEMBL
-
B4DV59
-
XM_047425053.1 → XP_047281009.1 REST corepressor 3 isoform X12
- UniProtKB/TrEMBL
-
B4DV59
- Related
- ENSP00000432779.1, ENST00000528926.5
-
XM_047425038.1 → XP_047280994.1 REST corepressor 3 isoform X8
- UniProtKB/TrEMBL
-
B4DV59
-
XM_047425051.1 → XP_047281007.1 REST corepressor 3 isoform X10
-
XM_047425011.1 → XP_047280967.1 REST corepressor 3 isoform X5
RNA
-
XR_007061956.1 RNA Sequence
-
XR_007061955.1 RNA Sequence
-
XR_007061958.1 RNA Sequence
-
XR_007061957.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
210504931..210561986
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054337627.1 → XP_054193602.1 REST corepressor 3 isoform X9
- UniProtKB/TrEMBL
-
B4DV59
-
XM_054337618.1 → XP_054193593.1 REST corepressor 3 isoform X1
-
XM_054337621.1 → XP_054193596.1 REST corepressor 3 isoform X4
-
XM_054337619.1 → XP_054193594.1 REST corepressor 3 isoform X2
-
XM_054337623.1 → XP_054193598.1 REST corepressor 3 isoform X6
-
XM_054337620.1 → XP_054193595.1 REST corepressor 3 isoform X3
-
XM_054337624.1 → XP_054193599.1 REST corepressor 3 isoform X7
-
XM_054337626.1 → XP_054193601.1 REST corepressor 3 isoform X9
- UniProtKB/TrEMBL
-
B4DV59
-
XM_054337629.1 → XP_054193604.1 REST corepressor 3 isoform X11
- UniProtKB/TrEMBL
-
B4DV59
-
XM_054337630.1 → XP_054193605.1 REST corepressor 3 isoform X12
- UniProtKB/TrEMBL
-
B4DV59
-
XM_054337625.1 → XP_054193600.1 REST corepressor 3 isoform X8
- UniProtKB/TrEMBL
-
B4DV59
-
XM_054337628.1 → XP_054193603.1 REST corepressor 3 isoform X10
-
XM_054337622.1 → XP_054193597.1 REST corepressor 3 isoform X5
RNA
-
XR_008486105.1 RNA Sequence
-
XR_008486104.1 RNA Sequence
-
XR_008486107.1 RNA Sequence
-
XR_008486106.1 RNA Sequence