bud13 BUD13 homolog [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: bud13provided by ZNC
Official Full Name: BUD13 homologprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6333
See related: Ensembl:ENSDARG00000006666 AllianceGenome:ZFIN:ZDB-GENE-030131-6333
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi47e11; wu:fi47e11; si:dkeyp-69c1.6
Summary: Acts upstream of or within mRNA splicing, via spliceosome. Predicted to be part of RES complex and U2-type spliceosomal complex. Is expressed in blastodisc and central nervous system. Orthologous to human BUD13 (BUD13 homolog). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 21

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (22697059..22705347)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (22660426..22668742)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fi47e06.y1 (e-PCR)
- UniSTS:197599

fi47e11.x1 (e-PCR)
- UniSTS:197603

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within mRNA splicing, via spliceosome	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of U2-type spliceosomal complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: BUD13 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001386240.1 → NP_001373169.1 BUD13 homolog

Status: VALIDATED

Source sequence(s)

BX510940

UniProtKB/TrEMBL

A0A8M9Q368, F1QH05

Related

ENSDARP00000065543.5, ENSDART00000065544.6

Conserved Domains (1) summary

pfam09736
Location:357 → 500

Bud13; Pre-mRNA-splicing factor of RES complex