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    ankrd12 ankyrin repeat domain 12 [ Danio rerio (zebrafish) ]

    Gene ID: 393119, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ankrd12provided by ZNC
    Official Full Name
    ankyrin repeat domain 12provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-846
    See related
    Ensembl:ENSDARG00000052419 AllianceGenome:ZFIN:ZDB-GENE-040426-846
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi16c02; zgc:55925; wu:fi16c02
    Summary
    Predicted to be active in nucleoplasm. Is expressed in central nervous system; eye; and telencephalon. Orthologous to human ANKRD12 (ankyrin repeat domain 12). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ankrd12 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (54696042..54787625)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (54966440..55054686)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene acyl-CoA synthetase short chain family member 2 like Neighboring gene NADH:ubiquinone oxidoreductase core subunit V2 Neighboring gene twisted gastrulation BMP signaling modulator 1a Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 Neighboring gene ring finger protein 126

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Analysis of a conditional gene trap reveals that tbx5a is required for heart regeneration in zebrafish. Grajevskaja V, et al. PLoS One, 2018. PMID 29933372, Free PMC Article
    2. 4.1Ba is necessary for glutamatergic synapse formation in the sensorimotor circuit of developing zebrafish. Fierro J Jr, et al. PLoS One, 2018. PMID 30286167, Free PMC Article
    3. Analyses of mRNA structure dynamics identify embryonic gene regulatory programs. Beaudoin JD, et al. Nat Struct Mol Biol, 2018 Aug. PMID 30061596, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC55925

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200150.2 → NP_956444.2  ankyrin repeat domain-containing protein 12

      Status: VALIDATED

      Source sequence(s)
      CU469527, CU481927, FO907121
      UniProtKB/TrEMBL
      A0A8M6Z179, B8JLP7
      Related
      ENSDARP00000088636.4, ENSDART00000097864.6

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      54696042..54787625
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017357916.3 → XP_017213405.1  ankyrin repeat domain-containing protein 12 isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z2V6
    Nucleotide Protein Strain
    Heading Accession and Version

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