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    znf740a zinc finger protein 740a [ Danio rerio (zebrafish) ]

    Gene ID: 571608, updated on 9-Dec-2024

    Summary

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    Official Symbol
    znf740aprovided by ZNC
    Official Full Name
    zinc finger protein 740aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5064
    See related
    Ensembl:ENSDARG00000070939 AllianceGenome:ZFIN:ZDB-GENE-030131-5064
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fe37a05; wu:fe37a05; zgc:175171
    Summary
    Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZNF740 (zinc finger protein 740). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See znf740a in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (2251619..2297851, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (2229556..2274454, complement)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene single-strand-selective monofunctional uracil-DNA glycosylase 1 Neighboring gene heterogeneous nuclear ribonucleoprotein A1a Neighboring gene LIM domain and actin binding 1b Neighboring gene insulin-like growth factor binding protein 6a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    gastrula zinc finger protein XlCGF57.1; gastrula zinc finger protein XlCGF58.1; zinc finger protein 28; zinc finger protein 436; zinc finger protein 467; zinc finger protein 84; zinc finger protein ZFP2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      2251619..2297851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172798.5 → XP_005172855.1  zinc finger protein 467 isoform X17

      UniProtKB/TrEMBL
      A0A0R4IUY8, A0A8M2BK01, A0A8M9PV46, A0A8M9QHU4, A0A8M9QLS2
      Related
      ENSDARP00000139079.2, ENSDART00000158266.3
      Conserved Domains (3) summary
      COG5048
      Location:7 → 304
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:148 → 168
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    2. XM_021479682.2 → XP_021335357.1  gastrula zinc finger protein XlCGF57.1 isoform X15

      UniProtKB/TrEMBL
      A0A8M9PV43
      Conserved Domains (2) summary
      COG5048
      Location:138 → 412
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:148 → 168
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_005172785.5 → XP_005172842.1  gastrula zinc finger protein XlCGF58.1 isoform X3

      UniProtKB/TrEMBL
      A0A8M2BKK7
      Conserved Domains (3) summary
      COG5048
      Location:138 → 475
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:400 → 420
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    4. XM_695213.10 → XP_700305.4  gastrula zinc finger protein XlCGF57.1 isoform X16

      UniProtKB/TrEMBL
      A0A8N7TES1
      Conserved Domains (3) summary
      COG5048
      Location:138 → 412
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:316 → 336
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    5. XM_068224252.1 → XP_068080353.1  zinc finger protein 436 isoform X10

    6. XM_005172784.5 → XP_005172841.1  zinc finger protein ZFP2 isoform X6

      UniProtKB/TrEMBL
      A0A8M2BJZ3
      Conserved Domains (3) summary
      COG5048
      Location:138 → 475
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:400 → 420
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    7. XM_005172790.5 → XP_005172847.1  zinc finger protein 28 isoform X13

      UniProtKB/TrEMBL
      A0A8M2BJZ8
      Conserved Domains (3) summary
      COG5048
      Location:138 → 440
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:344 → 364
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    8. XM_009305757.4 → XP_009304032.1  zinc finger protein ZFP2 isoform X7

      UniProtKB/TrEMBL
      A0A8M3B3S9
      Conserved Domains (3) summary
      COG5048
      Location:138 → 475
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:400 → 420
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    9. XM_005172786.5 → XP_005172843.1  zinc finger protein 436 isoform X9

      UniProtKB/TrEMBL
      A0A8M2BK09
      Conserved Domains (3) summary
      COG5048
      Location:138 → 468
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:372 → 392
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    10. XM_068224251.1 → XP_068080352.1  zinc finger protein ZFP2 isoform X5

    11. XM_009305759.4 → XP_009304034.1  zinc finger protein 84 isoform X12

      UniProtKB/TrEMBL
      A0A8M3BDG6
      Conserved Domains (3) summary
      COG5048
      Location:138 → 440
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:344 → 364
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    12. XM_068224253.1 → XP_068080354.1  zinc finger protein 436 isoform X14

    13. XM_005172783.5 → XP_005172840.1  zinc finger protein ZFP2 isoform X4

      UniProtKB/TrEMBL
      A0A8M2BK38
      Conserved Domains (3) summary
      COG5048
      Location:138 → 456
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:400 → 420
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    14. XM_005172782.5 → XP_005172839.1  zinc finger protein 436 isoform X2

      UniProtKB/TrEMBL
      A0A8M2BK26
      Conserved Domains (3) summary
      COG5048
      Location:138 → 475
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:400 → 420
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    15. XM_005172789.5 → XP_005172846.1  zinc finger protein 436 isoform X11

      UniProtKB/TrEMBL
      A0A8M2BK42
      Conserved Domains (3) summary
      COG5048
      Location:138 → 468
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:372 → 392
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    16. XM_009305758.4 → XP_009304033.1  zinc finger protein 436 isoform X8

      UniProtKB/TrEMBL
      A0A8M3AXC9
      Conserved Domains (3) summary
      COG5048
      Location:138 → 475
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:400 → 420
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160 → 185
      zf-H2C2_2; Zinc-finger double domain

    17. XM_005172780.5 → XP_005172837.1  zinc finger protein ZFP2 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QLS0
      Conserved Domains (2) summary
      COG5048
      Location:138 → 503
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:428 → 448
      ZF_C2H2; C2H2 Zn finger [structural motif]

    18. XM_021479680.2 → XP_021335355.1  zinc finger protein ZFP2 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QLS0
      Conserved Domains (2) summary
      COG5048
      Location:138 → 503
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:428 → 448
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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