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    rbm44 RNA binding motif protein 44 [ Danio rerio (zebrafish) ]

    Gene ID: 567482, updated on 9-Dec-2024

    Summary

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    Official Symbol
    rbm44provided by ZNC
    Official Full Name
    RNA binding motif protein 44provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5562
    See related
    Ensembl:ENSDARG00000069758 AllianceGenome:ZFIN:ZDB-GENE-030131-5562
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi04c05; wu:fi04c05; si:dkey-89p3.3; si:dkey-189g17.2
    Summary
    Predicted to enable protein homodimerization activity. Predicted to be located in cytoplasm and intercellular bridge. Orthologous to human RBM44 (RNA binding motif protein 44). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See rbm44 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (22656952..22672828)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (22846340..22861959)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase beta-like Neighboring gene ETS variant transcription factor 5a Neighboring gene integrin, beta 5 Neighboring gene tumor necrosis factor, alpha-induced protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A Germline-Specific Regulator of Mitochondrial Fusion is Required for Maintenance and Differentiation of Germline Stem and Progenitor Cells. Zhang R, et al. Adv Sci (Weinh), 2022 Dec. PMID 36257818, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in intercellular bridge ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding protein 44

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001128542.1 → NP_001122014.1  RNA-binding protein 44

      See identical proteins and their annotated locations for NP_001122014.1

      Status: PROVISIONAL

      Source sequence(s)
      BX548053, CR391951
      UniProtKB/Swiss-Prot
      B0S6S9
      Related
      ENSDARP00000092541.3, ENSDART00000101765.4
      Conserved Domains (1) summary
      cd00590
      Location:752 → 819
      RRM_SF; RNA recognition motif (RRM) superfamily

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      22656952..22672828
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068223446.1 → XP_068079547.1  RNA-binding protein 44 isoform X3

      UniProtKB/Swiss-Prot
      B0S6S9

    2. XM_068223444.1 → XP_068079545.1  RNA-binding protein 44 isoform X1

    3. XM_068223445.1 → XP_068079546.1  RNA-binding protein 44 isoform X2

    4. XM_068223447.1 → XP_068079548.1  RNA-binding protein 44 isoform X4

    5. XM_068223449.1 → XP_068079550.1  RNA-binding protein 44 isoform X6

    6. XM_068223448.1 → XP_068079549.1  RNA-binding protein 44 isoform X5

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394751.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      469896..484793
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395279.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      194065..207000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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