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    si:dkey-85k7.7 si:dkey-85k7.7 [ Danio rerio (zebrafish) ]

    Gene ID: 399650, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-85k7.7provided by ZNC
    Official Full Name
    si:dkey-85k7.7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040128-7
    See related
    Ensembl:ENSDARG00000101135 AllianceGenome:ZFIN:ZDB-GENE-040128-7
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    sb:cb930
    Summary
    Is expressed in alar plate midbrain region; epidermis; nervous system; optic vesicle; and ventral mesenchyme. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See si:dkey-85k7.7 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (21859356..21874346)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (21593018..21608008)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101882514 Neighboring gene U2 spliceosomal RNA Neighboring gene transmembrane 4 L six family member 5 Neighboring gene methyltransferase like 3 Neighboring gene POP7 homolog, ribonuclease P/MRP subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Zebrafish Chromosome 14 Gene Differential Expression in the fmr1 (h u2787) Model of Fragile X Syndrome. Barthelson K, et al. Front Genet, 2021. PMID 34135935, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125779.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX005336, EH448781, EH474617
      Related
      ENSDART00000159626.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      21859356..21874346
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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