si:dkey-33c12.4 si:dkey-33c12.4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:dkey-33c12.4provided by ZNC
Official Full Name: si:dkey-33c12.4provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2527
See related: Ensembl:ENSDARG00000057890 AllianceGenome:ZFIN:ZDB-GENE-030131-2527
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc10f01; wu:fc10f01; si:ch211-243o19.6
Summary: Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

See si:dkey-33c12.4 in Genome Data Viewer

Location:: chromosome: 13

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (9340641..9367501, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (9008618..9035478, complement)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fi50f02.y1 (e-PCR)
- UniSTS:197669

fc10f01.x1 (e-PCR)
- UniSTS:192462

fc10f01.x1 (e-PCR)
- UniSTS:192463

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC560112

Names: tetratricopeptide repeat domain 31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001161599.1 → NP_001155071.1 uncharacterized protein LOC560112

Status: PREDICTED

Source sequence(s)

BX901922

UniProtKB/TrEMBL

A0A8M1NUL5, A0A8M9QFE8, B8A599

Related

ENSDARP00000077797.5, ENSDART00000083362.7

Conserved Domains (4) summary

smart00360
Location:502 → 567

RRM; RNA recognition motif

cd14270
Location:413 → 439

UBA; UBA domain found in proteins involved in ubiquitin-mediated proteolysis

sd00006
Location:331 → 361

TPR; TPR repeat [structural motif]

pfam13414
Location:305 → 363

TPR_11; TPR repeat