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    smim29 small integral membrane protein 29 [ Danio rerio (zebrafish) ]

    Gene ID: 387006, updated on 9-Dec-2024

    Summary

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    Official Symbol
    smim29provided by ZNC
    Official Full Name
    small integral membrane protein 29provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031118-211
    See related
    Ensembl:ENSDARG00000090634 AllianceGenome:ZFIN:ZDB-GENE-031118-211
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fc84a10; si:dkey-226k3.4
    Summary
    Predicted to be located in membrane. Orthologous to human SMIM29 (small integral membrane protein 29). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See smim29 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (3720978..3744843)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (3778325..3801940)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene si:dkey-9l20.3 Neighboring gene protein kinase C and casein kinase substrate in neurons 1a Neighboring gene uncharacterized LOC101885468 Neighboring gene uncharacterized LOC101885428 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 3a Neighboring gene high mobility group AT-hook 1a Neighboring gene opsin 7, group member b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The response of HMGA1 to changes in oxygen availability is evolutionarily conserved. Moussavi Nik SH, et al. Exp Cell Res, 2011 Jul 1. PMID 21530505
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C6orf1 homolog; small integral membrane protein 29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      3720978..3744843
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005161911.5 → XP_005161968.1  small integral membrane protein 29

      See identical proteins and their annotated locations for XP_005161968.1

      UniProtKB/TrEMBL
      A0A8M1RMP8, E7EZ47
      Related
      ENSDARP00000117009.1, ENSDART00000141782.2

    2. XM_002666404.5 → XP_002666450.1  small integral membrane protein 29

      See identical proteins and their annotated locations for XP_002666450.1

      UniProtKB/TrEMBL
      A0A8M1RMP8, E7EZ47
    Nucleotide Protein Strain
    Heading Accession and Version

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