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    nckap5l NCK-associated protein 5-like [ Danio rerio (zebrafish) ]

    Gene ID: 568475, updated on 9-Dec-2024

    Summary

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    Official Symbol
    nckap5lprovided by ZNC
    Official Full Name
    NCK-associated protein 5-likeprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090313-304
    See related
    Ensembl:ENSDARG00000079148 AllianceGenome:ZFIN:ZDB-GENE-090313-304
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb77e12; wu:fb77e12; si:dkey-31b16.13
    Summary
    Predicted to be involved in microtubule bundle formation and microtubule depolymerization. Predicted to be active in microtubule plus-end. Orthologous to human NCKAP5L (NCK associated protein 5 like). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See nckap5l in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (24611705..24664358)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (24685145..24739318)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene mutL homolog 3 (E. coli) Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene microRNA 26b Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 Neighboring gene stromal cell derived factor 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    nck-associated protein 5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      24611705..24664358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005162212.5 → XP_005162269.1  nck-associated protein 5-like isoform X1

      See identical proteins and their annotated locations for XP_005162269.1

      UniProtKB/TrEMBL
      A0A8M2B982
      Conserved Domains (2) summary
      pfam15246
      Location:1023 → 1316
      NCKAP5; Nck-associated protein 5, Peripheral clock protein
      cl25751
      Location:520 → 771
      DUF4045; Domain of unknown function (DUF4045)

    2. XM_021469964.2 → XP_021325639.1  nck-associated protein 5-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9PQS7
      Related
      ENSDARP00000116785.1, ENSDART00000134978.2
      Conserved Domains (2) summary
      pfam15246
      Location:1022 → 1315
      NCKAP5; Nck-associated protein 5, Peripheral clock protein
      cl25751
      Location:519 → 770
      DUF4045; Domain of unknown function (DUF4045)

    3. XM_005162213.5 → XP_005162270.1  nck-associated protein 5-like isoform X1

      See identical proteins and their annotated locations for XP_005162270.1

      UniProtKB/TrEMBL
      A0A8M2B982
      Conserved Domains (2) summary
      pfam15246
      Location:1023 → 1316
      NCKAP5; Nck-associated protein 5, Peripheral clock protein
      cl25751
      Location:520 → 771
      DUF4045; Domain of unknown function (DUF4045)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395151.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      232302..284955
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473691.2 → XP_021329366.1  nck-associated protein 5-like isoform X1

      UniProtKB/TrEMBL
      A0A8M2B982
      Conserved Domains (2) summary
      pfam15246
      Location:1023 → 1316
      NCKAP5; Nck-associated protein 5, Peripheral clock protein
      cl25751
      Location:520 → 771
      DUF4045; Domain of unknown function (DUF4045)

    2. XM_021473693.2 → XP_021329368.1  nck-associated protein 5-like isoform X2

      UniProtKB/TrEMBL
      A0A8M9PQS7
      Conserved Domains (2) summary
      pfam15246
      Location:1022 → 1315
      NCKAP5; Nck-associated protein 5, Peripheral clock protein
      cl25751
      Location:519 → 770
      DUF4045; Domain of unknown function (DUF4045)

    3. XM_021473692.2 → XP_021329367.1  nck-associated protein 5-like isoform X1

      UniProtKB/TrEMBL
      A0A8M2B982
      Conserved Domains (2) summary
      pfam15246
      Location:1023 → 1316
      NCKAP5; Nck-associated protein 5, Peripheral clock protein
      cl25751
      Location:520 → 771
      DUF4045; Domain of unknown function (DUF4045)
    Nucleotide Protein Strain
    Heading Accession and Version

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