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    si:dkey-31c13.1 si:dkey-31c13.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100002197, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-31c13.1provided by ZNC
    Official Full Name
    si:dkey-31c13.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-141222-57
    See related
    Ensembl:ENSDARG00000104058 AllianceGenome:ZFIN:ZDB-GENE-141222-57
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA-binding transcription factor activity. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-31c13.1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (11683107..11691365)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (11799017..11807387)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487723 Neighboring gene solute carrier family 1 member 5 Neighboring gene fukutin related protein Neighboring gene striatin, calmodulin binding protein 4 Neighboring gene protein kinase D2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC100002197

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386261.1 → NP_001373190.1  uncharacterized protein LOC100002197 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BX324136
      UniProtKB/TrEMBL
      A0A0R4IB27, A0A8M3ASJ2
      Related
      ENSDARP00000129890.1, ENSDART00000168233.2
      Conserved Domains (1) summary
      pfam15299
      Location:44 → 207
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    2. NM_001386262.1 → NP_001373191.1  uncharacterized protein LOC100002197 isoform 2

      Status: VALIDATED

      Source sequence(s)
      BX324136
      UniProtKB/TrEMBL
      A0A8M3APM5
      Conserved Domains (1) summary
      pfam15299
      Location:44 → 167
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      11683107..11691365
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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