U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    cbln1 cerebellin 1 precursor [ Danio rerio (zebrafish) ]

    Gene ID: 436793, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    cbln1provided by ZNC
    Official Full Name
    cerebellin 1 precursorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-226
    See related
    Ensembl:ENSDARG00000057296 AllianceGenome:ZFIN:ZDB-GENE-040718-226
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:92807
    Summary
    Predicted to be involved in maintenance of synapse structure. Predicted to be active in glutamatergic synapse and synaptic cleft. Is expressed in gonad primordium. Orthologous to human CBLN1 (cerebellin 1 precursor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See cbln1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (18104235..18110032)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (18115098..18120966)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101885646 Neighboring gene zinc finger protein 423 Neighboring gene si:ch211-212o1.2 Neighboring gene uncharacterized LOC137488269 Neighboring gene uncharacterized LOC137488268 Neighboring gene uncharacterized LOC110438088

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Differential expression and intrachromosomal evolution of the sghC1q genes in zebrafish (Danio rerio). Carland TM, et al. Dev Comp Immunol, 2012 Jan. PMID 21683091
    2. Knocking Down Snrnp200 Initiates Demorphogenesis of Rod Photoreceptors in Zebrafish. Liu Y, et al. J Ophthalmol, 2015. PMID 26137319, Free PMC Article
    3. A fish with no sex: gonadal and adrenal functions partition between zebrafish NR5A1 co-orthologs. Yan YL, et al. Genetics, 2021 Feb 9. PMID 33724412, Free PMC Article
    4. Bioinformatic identification of genes encoding C1q-domain-containing proteins in zebrafish. Mei J, et al. J Genet Genomics, 2008 Jan. PMID 18222405
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in maintenance of synapse structure IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in glutamatergic synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in synaptic cleft IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cerebellin-1
    Names
    sghC1q01

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430964.1 → NP_001417893.1  cerebellin-1 precursor

      Status: VALIDATED

      Source sequence(s)
      CR387935, CU464133
      Related
      ENSDARP00000116647.1, ENSDART00000145342.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      18104235..18110032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395019.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      419552..420630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001002520.1: Suppressed sequence

      Description
      NM_001002520.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools