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    • Showing Current items.

    si:dkey-15j16.3 si:dkey-15j16.3 [ Danio rerio (zebrafish) ]

    Gene ID: 556440, updated on 4-Jan-2025

    Summary

    Official Symbol
    si:dkey-15j16.3provided by ZNC
    Official Full Name
    si:dkey-15j16.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4680
    See related
    Ensembl:ENSDARG00000042683 AllianceGenome:ZFIN:ZDB-GENE-030131-4680
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd51a09; wu:fd51a09; si:ch211-87e4.2
    Summary
    Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    NEW
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    Genomic context

    See si:dkey-15j16.3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (23838810..23842633, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (23939710..23943533, complement)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene NIMA-related kinase 1 Neighboring gene SH3 domain containing ring finger 1 Neighboring gene si:dkey-15j16.6 Neighboring gene glycoprotein integral membrane 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC556440

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001083824.2NP_001077293.2  uncharacterized protein LOC556440 precursor

      Status: VALIDATED

      Source sequence(s)
      BX255904
      UniProtKB/TrEMBL
      A0A8M1NCP0
      Related
      ENSDARP00000127287.1, ENSDART00000153079.3
      Conserved Domains (2) summary
      smart00410
      Location:27119
      IG_like; Immunoglobulin like
      pfam07686
      Location:132226
      V-set; Immunoglobulin V-set domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      23838810..23842633 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)