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    • Showing Current items.

    zgc:193812 zgc:193812 [ Danio rerio (zebrafish) ]

    Gene ID: 797701, updated on 9-Dec-2024

    Summary

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    Official Symbol
    zgc:193812provided by ZNC
    Official Full Name
    zgc:193812provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081022-44
    See related
    Ensembl:ENSDARG00000097310 AllianceGenome:ZFIN:ZDB-GENE-081022-44
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:193823; zgc:194151; zgc:194156; si:ch211-59o9.8
    Summary
    Predicted to be active in cytoplasm. Orthologous to human C15orf40 (chromosome 15 open reading frame 40). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zgc:193812 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (19485327..19486411, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (19387376..19388460, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene cocaine- and amphetamine-regulated transcript 2 Neighboring gene uncharacterized LOC137489349 Neighboring gene glutaminase like Neighboring gene SH3-domain GRB2-like 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    UPF0235 protein C15orf40 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001291888.1 → NP_001278817.1  UPF0235 protein C15orf40 homolog

      Status: VALIDATED

      Source sequence(s)
      BC162245, CR385081
      UniProtKB/TrEMBL
      A0A8M1P6R8, X1WD69
      Related
      ENSDARP00000128166.1, ENSDART00000156016.2
      Conserved Domains (1) summary
      pfam02594
      Location:76 → 144
      DUF167; uncharacterized ACR, YggU family COG1872

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      19485327..19486411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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