tp53inp1 tumor protein p53 inducible nuclear protein 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tp53inp1provided by ZNC
Official Full Name: tumor protein p53 inducible nuclear protein 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-031018-3
See related: Ensembl:ENSDARG00000028017 AllianceGenome:ZFIN:ZDB-GENE-031018-3
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb1036; fb70a09; fi13h08; wu:fb70a09; wu:fi13h08; zgc:158431; si:ch211-233c16.2
Summary: Predicted to be involved in autophagosome assembly and positive regulation of DNA-templated transcription. Predicted to be located in PML body and cytoplasm. Predicted to be active in autophagosome and nucleus. Is expressed in nervous system and neural tube. Orthologous to human TP53INP1 (tumor protein p53 inducible nuclear protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 16

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (40560672..40569769)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (40610640..40619737)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb70a09.x1 (e-PCR)
- UniSTS:191011

fj84e08.x1 (e-PCR)
- UniSTS:200087

fb81f02.y1 (e-PCR)
- UniSTS:191640

fi13h08.x1 (e-PCR)
- UniSTS:204460

fb82h11.x1 (e-PCR)
- UniSTS:191702

fb82h11.x1 (e-PCR)
- UniSTS:191703

fb70a09 (e-PCR)
- UniSTS:187365

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in autophagosome assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of DNA-templated transcription	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in PML body	IEA Inferred from Electronic Annotation more info
is_active_in autophagosome	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: tumor protein p53-inducible nuclear protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.