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    syt13 synaptotagmin XIII [ Danio rerio (zebrafish) ]

    Gene ID: 550345, updated on 9-Dec-2024

    Summary

    Official Symbol
    syt13provided by ZNC
    Official Full Name
    synaptotagmin XIIIprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-135
    See related
    Ensembl:ENSDARG00000012306 AllianceGenome:ZFIN:ZDB-GENE-050417-135
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:112063
    Summary
    Predicted to enable SNARE binding activity; calcium ion sensor activity; and calcium-dependent phospholipid binding activity. Predicted to be involved in chemical synaptic transmission; regulation of calcium ion-dependent exocytosis; and vesicle-mediated transport. Predicted to be active in exocytic vesicle and plasma membrane. Is expressed in nervous system and trigeminal placode. Orthologous to human SYT13 (synaptotagmin 13). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See syt13 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (38716061..38734245)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (38444803..38463597)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene CD59 molecule (CD59 blood group) a Neighboring gene F-box protein 3 Neighboring gene zinc finger protein 408 Neighboring gene coagulation factor II (thrombin)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017652.1NP_001017652.1  synaptotagmin-13 precursor

      See identical proteins and their annotated locations for NP_001017652.1

      Status: PROVISIONAL

      Source sequence(s)
      BC093178
      UniProtKB/TrEMBL
      Q567G8
      Related
      ENSDARP00000013748.5, ENSDART00000024590.8
      Conserved Domains (2) summary
      cd08407
      Location:284419
      C2B_Synaptotagmin-13; C2 domain second repeat present in Synaptotagmin 13
      cd08677
      Location:151273
      C2A_Synaptotagmin-13; C2 domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      38716061..38734245
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017356856.3XP_017212345.3  synaptotagmin-13 isoform X1

      UniProtKB/TrEMBL
      A0A8M6Z749