U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    stard13b StAR related lipid transfer domain containing 13b [ Danio rerio (zebrafish) ]

    Gene ID: 100005208, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    stard13bprovided by ZNC
    Official Full Name
    StAR related lipid transfer domain containing 13bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050506-146
    See related
    Ensembl:ENSDARG00000098954 AllianceGenome:ZFIN:ZDB-GENE-050506-146
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    im:7147988
    Summary
    Predicted to enable GTPase activator activity. Predicted to be involved in actin cytoskeleton organization and regulation of Rho protein signal transduction. Predicted to act upstream of or within lipid transport and signal transduction. Orthologous to human STARD13 (StAR related lipid transfer domain containing 13). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See stard13b in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (33467531..33640900, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (33609552..33782924, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene neurobeachin b Neighboring gene mab-21-like 1 Neighboring gene uncharacterized LOC110437911 Neighboring gene histone deacetylase 12 Neighboring gene tRNA methyltransferase 9B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genomic organization and evolution of olfactory receptors and trace amine-associated receptors in channel catfish, Ictalurus punctatus. Gao S, et al. Biochim Biophys Acta Gen Subj, 2017 Mar. PMID 27773705
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables GTPase activator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of Rho protein signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    stAR-related lipid transfer protein 13
    Names
    StAR-related lipid transfer (START) domain containing 13b

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      33467531..33640900 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005157638.5 → XP_005157695.1  stAR-related lipid transfer protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B4J1, E7F8B8
      Related
      ENSDARP00000135603.1, ENSDART00000167705.2
      Conserved Domains (4) summary
      cd09592
      Location:419 → 482
      SAM_DLC2; SAM domain of STARD13-like subfamily
      smart00454
      Location:423 → 482
      SAM; Sterile alpha motif
      cd04375
      Location:1023 → 1243
      RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
      cl14643
      Location:1275 → 1478
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    2. XM_005157640.5 → XP_005157697.1  stAR-related lipid transfer protein 13 isoform X3

      UniProtKB/TrEMBL
      A0A8M2B4H2
      Conserved Domains (4) summary
      cd09592
      Location:42 → 105
      SAM_DLC2; SAM domain of STARD13-like subfamily
      smart00454
      Location:46 → 105
      SAM; Sterile alpha motif
      cd04375
      Location:646 → 866
      RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
      cl14643
      Location:898 → 1101
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    3. XM_001340078.9 → XP_001340114.1  stAR-related lipid transfer protein 13 isoform X2

      UniProtKB/TrEMBL
      A0A2R8QSF6, A0A8M1Q1U6
      Related
      ENSDARP00000156207.1, ENSDART00000187646.1
      Conserved Domains (4) summary
      cd09592
      Location:55 → 118
      SAM_DLC2; SAM domain of STARD13-like subfamily
      smart00454
      Location:59 → 118
      SAM; Sterile alpha motif
      cd04375
      Location:659 → 879
      RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
      cl14643
      Location:911 → 1114
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    4. XM_005157641.5 → XP_005157698.1  stAR-related lipid transfer protein 13 isoform X4

      UniProtKB/TrEMBL
      A0A8M2B3U3
      Conserved Domains (4) summary
      cd09592
      Location:5 → 68
      SAM_DLC2; SAM domain of STARD13-like subfamily
      smart00454
      Location:3 → 68
      SAM; Sterile alpha motif
      cd04375
      Location:609 → 829
      RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
      cl14643
      Location:861 → 1064
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

    5. XM_009291826.4 → XP_009290101.1  stAR-related lipid transfer protein 13 isoform X5

      UniProtKB/TrEMBL
      A0A8M3AQ23
      Conserved Domains (2) summary
      cd04375
      Location:543 → 763
      RhoGAP_DLC1; RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a ...
      cl14643
      Location:795 → 998
      SRPBCC; START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools