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    relt RELT TNF receptor [ Danio rerio (zebrafish) ]

    Gene ID: 404605, updated on 9-Dec-2024

    Summary

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    Official Symbol
    reltprovided by ZNC
    Official Full Name
    RELT TNF receptorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2361
    See related
    Ensembl:ENSDARG00000099724 AllianceGenome:ZFIN:ZDB-GENE-040426-2361
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Tnfrsf19l; zgc:77246
    Summary
    Predicted to be involved in apoptotic process. Predicted to be located in membrane. Is expressed in Kupffer's vesicle and axis. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 3C. Orthologous to human RELT (RELT TNF receptor). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See relt in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (2603234..2668673, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (2635421..2700452, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2Y2, tandem duplicate 2 Neighboring gene purinergic receptor P2Y2, tandem duplicate 3 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 17 Neighboring gene family with sequence similarity 168 member A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC77246

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in apoptotic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tumor necrosis factor receptor superfamily member 19L
    Names
    RELT tumor necrosis factor receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207073.2 → NP_996956.2  tumor necrosis factor receptor superfamily member 19L precursor

      Status: VALIDATED

      Source sequence(s)
      BX323823
      UniProtKB/TrEMBL
      Q6NZ11
      Related
      ENSDARP00000132358.1, ENSDART00000157510.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      2603234..2668673 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214749.1 → XP_068070850.1  tumor necrosis factor receptor superfamily member 19L isoform X1

      UniProtKB/TrEMBL
      Q6NZ11

    2. XM_068214750.1 → XP_068070851.1  tumor necrosis factor receptor superfamily member 19L isoform X1

      UniProtKB/TrEMBL
      Q6NZ11
      Related
      ENSDARP00000156166.1, ENSDART00000185754.1
    Nucleotide Protein Strain
    Heading Accession and Version

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