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    or30by1 odorant receptor, family 30, subfamily BY, member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 554781, updated on 9-Dec-2024

    Summary

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    Official Symbol
    or30by1provided by ZNC
    Official Full Name
    odorant receptor, family 30, subfamily BY, member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-010308-1
    See related
    Ensembl:ENSDARG00000025600 AllianceGenome:ZFIN:ZDB-GENE-010308-1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    or5.2; olfr5.2; or102-5; or15.61; Dr3OR15.53
    Summary
    Predicted to enable olfactory receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human OR2AT4 (olfactory receptor family 2 subfamily AT member 4); OR4M2 (olfactory receptor family 4 subfamily M member 2); and OR4M2B (olfactory receptor family 4 subfamily M member 2B). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See or30by1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (31481939..31482892)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (31598606..31603060)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene odorant receptor, family 30, subfamily BY, member 2 Neighboring gene odorant receptor, family C, subfamily 102, member 6, pseudogene Neighboring gene odorant receptor, family 5, member 5, pseudogene Neighboring gene protocadherin Fat 4 Neighboring gene high mobility group box 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Odorant receptor gene regulation: implications from genomic organization. Kratz E, et al. Trends Genet, 2002 Jan. PMID 11750698
    2. Analysis and characterization of an odorant receptor gene cluster in the zebrafish genome. Dugas JC, et al. Genomics, 2001 Jan 1. PMID 11161797
    3. Positive correlation between gene coexpression and positional clustering in the zebrafish genome. Ng YK, et al. BMC Genomics, 2009 Jan 22. PMID 19159490, Free PMC Article
    4. On the origin and evolution of vertebrate olfactory receptor genes: comparative genome analysis among 23 chordate species. Niimura Y. Genome Biol Evol, 2009 Apr 30. PMID 20333175, Free PMC Article
    5. The odorant receptor repertoire of teleost fish. Alioto TS, et al. BMC Genomics, 2005 Dec 6. PMID 16332259, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables olfactory receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables olfactory receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    odorant receptor 102-5
    Names
    odorant receptor, family 5, member 2
    odorant receptor, family C, subfamily 102, member 5
    olfactory receptor protein 5.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039625.1 → NP_001034714.1  odorant receptor 102-5

      See identical proteins and their annotated locations for NP_001034714.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ306114
      UniProtKB/TrEMBL
      A0A8M1N884, Q2PRB3
      Related
      ENSDARP00000118577.1, ENSDART00000134306.2
      Conserved Domains (2) summary
      cd14964
      Location:32 → 52
      7tm_GPCRs; TM helix 1 [structural motif]
      cl28897
      Location:32 → 303
      7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      31481939..31482892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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